RNA id: TU1671503


Basic Information

Item Value
RNA id TU1671503
length 2864
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1461060
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51704391 ~ 51707336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGGTTTTCCTAAAGCAAGCATATGATTTTTCACTTTTTTATTTGCATAGTTCAAGCATTTTGTGTATTTTTCGCCAAAATAGCAACAGTTGATGTTATTATTAAGATATACGTAGTTGAAATGGGAAATATGTACATAGACCAATGTGCTAAATCTTTCCACATCATTATTAGCCATAAATGCTACATTTTTTATCAAATATTGGACACCCCGTATTTGGCTGTTTTGTGTTTCTCAACACATTATGAGGCCAATTGTTCCAAAAATACCAATATTTTCAAAATCATCTTTAAACCAGGGTCTTCAAGACAAATCTTAAAagcaaattaaaaaaatattttagcaATAATCATTTTCCCCCAATATTGTGAAAAACGCAAAACATTCCTGATTACATGCTAAAAATGTAACCTGTCGGCTGAAACCTTATTTTAGTCATCAAATACCCATGAGtctaaaaaaatatgtactgcaTCTTTTGACCTTAGTTGTCCCTTTCTCAAACAAgaaaaaaatataactattttcttcagacttttttttattttttataataataatctGCTGTATACACTAATGTTTCCCTTGCCTCCAAACATGATGGCTTGAGTCTGAAGAAAGACATCCTCTTATACAGACACAGCATTGCCTCTGAGCCAATATTACAAAGGGGGAGAAACGAATGGATGGAGGAAaaaagacagagaaggagagatgggtgGATTGCGAGGGAGGAATGTAGACAGGAATAGAAAGGGCTGCGCTTTCAGAGGGCCACAGGTTCAATCTGGAGACGCTAACAGTGATCGACTGACAAACAAAATGTTCCTTATTAAGAGACAGCCAAAATGCAAAGGATGGGTCGGCAACTTATATTAGAGGACAGGAGGACGACGAGGATGTTGCACATACCTGCACCATGATACATCCTCCACTTAGAATGTGGAGTGACTTGTCATATACGTGTATAATATATGAGCTCCTCCAACCCTGACCAGGACAGCAATATGTCTATATATTTCTGTGTCTATCTATCTCTCACCCAAAGTGGTTGATCACGTTAGAAGTGATGGTTCATAGAAAAATAATTAGATGTATTTTGAGAGGTAAAAACGTATTGATCAGAATAAACGATCTCTATATGCTAAAAAAGGTTCAGTCTTCAACATAGCACTGTATAATATTAGGGATATGATACATGTAGGATGCATTTAGCTTTCTGATATGTACACACTGTAAGTTGGCTGTGATGCAGGTTGCTGGCCCATCTTAACACAAACAAGTGTTTCAACCAGCAGACTTATTCTAAGgtcacttctttttttttttactgacgtCTTTCcacatactatatactgtactgtatatatatatatgtatatatataaatgtagatATAGAGAGATTTTATCTACACATGTATCTATTgacatactgtaccactgaaGTAAGGTCTTATAGCAGTGAGAGAACTAAGAGGAGTCCAATGGCTTTAATGCCAATGGTGTGTGGGCTGTACTCACATCAAGACACACAGTTACCAGAGAACTAACAGCGGTTTCAGAGTGAGGCAGGATAGGTCTTCCTgcagacagtcacacacatacacatataggTCCCAACCAGCCCTGGGTGTAGGACGGGAAAGGGGACAGAGGGGGTGTAGCCTAGCCTGGAGAAAAGGTTGGGAGGCAGGCGTCACAGTGGGTTGGGTGTTCAATAGGTGTGTTCCTCACCTGGGATGAGAGGTGTTGGAAGGAATCGAAGGGAGACTCATGCAAACACTGCTGTACACCAATTTCCTGCGACCACtgtattgagggggggggggtactttcaTACAGTACAGCTCTCCCACTAATGGCCTCTGAAGACGACGCCAGGAAGTCGAAGGGCAAGGGCTGTTTAACTGAGTTTGAAACAATTACCTAGGAGCCAATCAGAGACAAAACAACATTGGCCATTTCCTGTTGTGTCAGGGTTTCCCCAAACTCGatgTTATGTTACTGTTCCCACTCCTATCTCTCTTTATGGTTCTTGAACTACCATCTGTCCGTCTCCTCTTCTGTGACCATTTCCTGTTACACTGTAACATCAGCCTCTGATTGGTTCTACTGCTCTCTGCACCAATAAGAAGCTCTCACTCCCCAGTCCCTCTTCCTGAAGTCCAGCACCGGCAGTCCTAATCCCTCTTCATCTTAACAGAGATCCGTGCATCACGTACGTTAAGTCCCCTCCTGAACCGTTCAGTCACAGAACTCTACTGTCCTGGGCTTCTAGTCTCTGTGGACCTTCTAATCTCTCTATAGCATACACCTTTCCTGAGCTGAGTAACGGAGAAAAACTGTTGAAACAGTCTCACTGTCAGTGTAGCATGGAGGAGAGCATGTTTGAGTGCTGTATACACCCCCTGGTTTCTGGCTAGCTTAGTAGTATCAAATGCTGTGTCAAACGCATCATCCCCAAAATAGTGAAACATGACAGCATTGTGTTTTATTTGCATTTGTTTAGTTTGCGTTACCTGCCCTTACAGAGAAGCTATTTTCTGCCAGGCCTAGACTAAGAAGAATTGTGTAAGTGTGgtgaaggatagagagagagtggagggagccGTTATAGACCCCTTGTGGTGGGAGGTGTGGGCCTCCATCATAGTCTGTTTGCCTTGAAAAAGTCCTCAGGTGGTCAACTTCCCAAACTTCCTGTGACCGCCTCATGTTTCCGGTTGTGTTGTTGTGGAGGTCATTGGGTTTATACACCGGCGGGCAGATGGTCTGGGAGATTAACCAGTTTCTTTGGGCATTTTTTTTATATTCCAGTGGATCCTCAGAAGGACGCTCCGTCAAACTTGACGGCAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671479 lncRNA upstream 40318 51662056 ~ 51664073 (+) True G1461036
TU1671446 lncRNA upstream 66697 51634342 ~ 51637694 (+) True csf1
TU1671440 lncRNA upstream 128339 51575770 ~ 51576052 (+) True G1460997
TU1671424 lncRNA upstream 135959 51568216 ~ 51568432 (+) True G1460981
TU1671223 lncRNA upstream 173737 51423155 ~ 51530654 (+) True G1460787
TU1671606 lncRNA downstream 167032 51874368 ~ 51876383 (+) True G1461150
TU1671610 lncRNA downstream 176901 51884237 ~ 51887958 (+) False G1461152
TU1671611 lncRNA downstream 176901 51884237 ~ 51888844 (+) True G1461152
TU1671694 lncRNA downstream 285712 51993048 ~ 51993827 (+) True G1461227
TU1671638 lncRNA downstream 339362 52046698 ~ 52095402 (+) True G1461178
NM_001124394.1 mRNA upstream 63979 51601530 ~ 51640412 (+) False csf1
XM_036947882.1 mRNA upstream 64122 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA upstream 64122 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA upstream 64122 51601464 ~ 51640269 (+) False csf1
XM_021568742.2 mRNA upstream 641630 51052682 ~ 51062761 (+) True apobec2a
XM_036950089.1 mRNA downstream 259703 51967039 ~ 52121978 (+) False LOC110494059
XM_036950103.1 mRNA downstream 259704 51967040 ~ 52104247 (+) False LOC110494059
XM_036950086.1 mRNA downstream 259704 51967040 ~ 52121978 (+) False LOC110494059
XM_036950087.1 mRNA downstream 259704 51967040 ~ 52121978 (+) False LOC110494059
XM_036950088.1 mRNA downstream 259704 51967040 ~ 52121978 (+) False LOC110494059
TU1670644 other upstream 613502 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 806947 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 927319 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1268685 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1520695 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2466678 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2549045 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2764369 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2764609 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 4289312 55996648 ~ 55998174 (+) False G1466124

Expression Profile