RNA id: TU1671610


Basic Information

Item Value
RNA id TU1671610
length 3700
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1461152
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51884237 ~ 51888844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAACAATATTACAAAACATGGTCAAAAAATAAGAAAATGCAATACAATTTTAAAGTCTAAAGCATAAGAAGTGGGGTAAAACTATATCCTGAATAAAAGAAAGAAACCACATTAATGATATTCTCAGTATTTACAGTACACAAGATCCAGTTCATTTTGAACTTACATTCGGTCCCGTTTTCCCAGCATTCCATAGAGGTCAGAGTTCAGTCCCTTGGAGCTGACCTGGAAGGACTCAGGTCAAACTCTTGCCCATCCCAAATTGACCCCTAGCCCATACCCCTAGGCACTTCACATAGATCTGAAAGAACTAGAGAGGTACCTTCTGGTAGAATTTTCACTATATTGCTCAGACCTATACATTATTTTCAGATTTACACTTGGTATTTAGCAGGTAGGTGCTTGGTTTGGGAGTCCCAATGCCTTCCAATTAACCCCTGTCCTGGTCTCCTTCCATGTGTAATCACTGGTCTGTTAGGCAAGAGCAACATTTCTATCATAaaacttttaaccagagccctatactGCATAGAGATCCATATTTGACTCTACTCTTAGCTAGAGTGTCAAGACCAGAAAGAAAAAGAGACATGGAGAAGGAAGCCATATGGTGTCCCTCCTTTCCCCCAAAGTGGTACAACTGTCAcaaggaaaaaaaacaattaaaataacTTTAATATCGGTCATCAGTCGTTTAGCACACAACAAATACCAACACTCAATATGGAGAAAGTCCTCTTTCAATCATTTAAAAATGTCACACTAAGAGACTATAGCCACATTATAGCCATTCAGACTGTAGTGAAACACCCCCAGGGAATATTCTTCCTGTTCTAGAAAAAATATGTAAATATCCACCAGACACATTCAAAGGGCAGTCAAATAAAGTGTTTTTGAACGAGAGCAGTGGTTAAACTGGTTGGTTCGGGTTAAGCATGCTGGTCCTGTGTGATTACTGCACTTCAGCCTGAGATAGGCTAACCTTTAGTCGAAGAGCTCCTCTTGTCATTTCTAACACACACCTGTTCAAAACTGTCTTACCCTTGTTTCTAAAACAGCGATGTAGCTACTCTTTATGATTTCTGAATGAAGAAACATTTTCAGAGATTTTGAAAAAAGATCAATGCTTTTAAAACAGGGCTGGTGAATTGTATGTTATGTCAAAGCCTATGCAAGCAAACCAAAACAAATAGCATCTAAATATTCCTTGCAATGGATGCGGGTATGTTTAATGATCCAAACAAATACGCGTTACATTTCAACACCTTAGAAAGCCAGCCTTAATCTGTATTCGTCTGTAATTGTATTGTGTTCTGAAAACATCGGACACACACTTACCGATAGCTGCTCTGTTATAGAAACTTCCTTCACCGATTAACCATATTTCACCAGGAGTTGTTTTTTCCTGACCAGGAATAAACTTTGTCCtagttatttatatattttttacaggtCAACCCTTCTTGCTCAATTCATGAGTTAACCTTGATATtcctctctcaatagcaacaaCTCTGCCCACAAGCAGATTTTCCCACTGAAAGTGGCCATTTTGCATTGCGAAAGGTCACAGTGTCTGTCTGCCAGTGAAACAAGGACAGTGTGTCCAGCTCTTACACAAGAAAATGAGAGCGAGATATCAATGCCAAAAAATGGCAAACTATCAAATCACTGAGTATCTCCCAAGGAAAGACACAAATGAGTTGAGCAATGTGCACGTAGTCAAAACCTTGATTTGCTTCGTCAGCACTTCTGTCACTgttccgtccccccccccccccccccccccctcttatagctacagtactgtataacACATGAACAGGATCACTTTGTCGTTTGAAAAAGCCACGAAAGTCAAATGTAAGTTCAAAATGCTTGAGAAATAAAAACCAAGtgaaacatttccactgcatacAGTCGGAATGGCGTGAGAGTTTAGTGTCTGAAAGAGCATTTCTTTGCTCAGGCAGTTTATCCGTGACGCCAGCAAATCGTCTGATTTTCCCCACATAGACGTAAACGTAGAAGCACTCATGCAacgacaacaaaaaaaatattctaaAGGCGTTGATATAAGAAACATTTTTGAACAAACGTTTGAGATTTGAGGATTCTCCCATGAAGACAACATTGTTATGTCAACGAACAGTACTACATTTAAAATTCGATTAGCGACCTGTGTCAATTATCATCAAACGGCAAAATGAAGCGTAGGTAAGGCTTGGATTTACAACAGCTAGTCAACAAtgggagacacaaacacacacacacacacacacccaaaccagCGCACACTCCAACAAGTTCTAATGCAGAGGAGCTACTGAATCAGGCTGAGTGGACGAAAGTCACGTGAGTCTTTAAAATGTGTTAGGGAGGACCCAAACCATAGGCAGGTCCGGTTGGTACTGTACATCTCTACCCCACAATGACACAAAAGCATctacgccctctctctctctcaaatcagaAGGACTGGATCCAACATCATTCACATATCACGATCTGCATACATCTGGGGTACACACAGAAATCAaaatcacacacacacacacacacacacacacacacacaaccaaacagaGCTCGAAATGGAGCGGCACTAACAGAAGGGTAACGCTTGAAAAATAAATAACTTACGGTTCTCTTTTAAAAGACAGGACTTTGGAGGGGACCAGACCCGTTTCAAAGTCTTTTAAAAGACAGGACTTTGGAGGGGACCAGACCCGTTTCAAAGTCTTTTTCGCCAGGCGGTAAGATGGACGTCTCTCTGTTGCCCCTAGATAAAGGGGAAAGAAGCGGTCCATGTTTTCACAGAGTAACAATGCCCTCTGCTTCCTCCCACTGGTCCCCCGTGCTGCCTGGTCTTGGGAGGCCATGTTGTTACCAGAGGAAAGTCTTCTGGAAGTCAGAGTCACTGAGAAGAACAGACTGGTTATCTTCACATGCCCCAGTTGTCCCTTCTTATGCTGATCAGAGAGTCTTAAAGTGGGTCCatacagtccagtacagtcccATGGATACAGTGTCCAGTGACGATTGACCgtcaattatatatattttttaatttaaccttcatttaactaggcaagtcagttaaggacaaattcttatttacaatgatggcctaccccggccaaacccggacaacgctgggccaactacgcgccaccctatgggtctctcaatcatggccggatgtgatacaagcctggattcaaaccagggaccatagtgacgcctcttgcactgagatgcagtgcctcagacagctgcgccactcgggagcgaATGAGTCAATGAgtctacagacacacaaacacacctcaaaCCTACATAGGACACACACATCCCACCTGGGCAGGATACGGGTTCACACACACCCCCACTGGGGGAATAAACCAGCCCGAGAAGCTGGACAACTCTGACCATAACAACTGAACGCACTCACGTACACCTGTGTGCACGCACAACCTGATCAGTCgttccactctccctctcaccctccaccTCCGACCCTCATTCTTAGCGTGTGGAGTCGGTGCTGGGCGTGCCCAGCTGGTGCCAGTCTGCCCAGCACTGCCCGGCTGTCAGGGTCTTCAGGGGGATGAAGGCCTCGCCCAGCAGGGTGTTTTCCCAGAACGCACCCTCCCCCAGCACCCGCAGGTGGATCACCCTCTGCTGCAGGTCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671606 lncRNA upstream 7854 51874368 ~ 51876383 (+) True G1461150
TU1671503 lncRNA upstream 176901 51704391 ~ 51707336 (+) True G1461060
TU1671479 lncRNA upstream 220164 51662056 ~ 51664073 (+) True G1461036
TU1671446 lncRNA upstream 246543 51634342 ~ 51637694 (+) True csf1
TU1671440 lncRNA upstream 308185 51575770 ~ 51576052 (+) True G1460997
TU1671694 lncRNA downstream 105090 51993048 ~ 51993827 (+) True G1461227
TU1671638 lncRNA downstream 158740 52046698 ~ 52095402 (+) True G1461178
TU1671641 lncRNA downstream 214534 52102492 ~ 52102997 (+) True G1461181
TU1671760 lncRNA downstream 221257 52109215 ~ 52109575 (+) True G1461292
TU1671635 lncRNA downstream 223765 52111723 ~ 52113123 (+) True G1461175
NM_001124394.1 mRNA upstream 243825 51601530 ~ 51640412 (+) False csf1
XM_036947882.1 mRNA upstream 243968 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA upstream 243968 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA upstream 243968 51601464 ~ 51640269 (+) False csf1
XM_021568742.2 mRNA upstream 821476 51052682 ~ 51062761 (+) True apobec2a
XM_036950089.1 mRNA downstream 79081 51967039 ~ 52121978 (+) False LOC110494059
XM_036950103.1 mRNA downstream 79082 51967040 ~ 52104247 (+) False LOC110494059
XM_036950086.1 mRNA downstream 79082 51967040 ~ 52121978 (+) False LOC110494059
XM_036950087.1 mRNA downstream 79082 51967040 ~ 52121978 (+) False LOC110494059
XM_036950088.1 mRNA downstream 79082 51967040 ~ 52121978 (+) False LOC110494059
TU1670644 other upstream 793348 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 986793 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1107165 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1448531 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1700541 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2286056 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2368423 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2583747 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2583987 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 4108690 55996648 ~ 55998174 (+) False G1466124

Expression Profile