RNA id: TU1671641


Basic Information

Item Value
RNA id TU1671641
length 407
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1461181
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52102492 ~ 52102997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTTAAATACCCTGGTAAGGGTTAACAGAAGGGAGTTAAATACCCAGGTAAGGGTTAACAGAAGGGAGTTAACAGAAGGGAGTTAAATACCCAGGTAAGGGTTAACAGAAGGGAGTTAAATACCCAGATAAGGGTTAACAGAAGGGAGTTAAATACCCAGGTAAGGGTTAACAGAAGGGAGTTAAATACCCAGGTAAGGGTTAACAGAAGGGAGTTAAATACCCAGGTAAGGGTTAACAGAAGGGAGTTAAATACCCAGGTAAGAGTTAACAGAAGAGAGTTAAATACCTAGGTAAGGTAATGATGTGGGGTGGGAGTGGGTCAAGCTCCAATGTAAGAGTTTACAGGTCAAACATAAATGCAAACGTAATGGGTTATTCAATTACGGAGAGCAGCACCCATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671638 lncRNA upstream 7090 52046698 ~ 52095402 (+) True G1461178
TU1671694 lncRNA upstream 108665 51993048 ~ 51993827 (+) True G1461227
TU1671611 lncRNA upstream 213648 51884237 ~ 51888844 (+) True G1461152
TU1671610 lncRNA upstream 214534 51884237 ~ 51887958 (+) False G1461152
TU1671606 lncRNA upstream 226109 51874368 ~ 51876383 (+) True G1461150
TU1671760 lncRNA downstream 6218 52109215 ~ 52109575 (+) True G1461292
TU1671635 lncRNA downstream 8726 52111723 ~ 52113123 (+) True G1461175
TU1671768 lncRNA downstream 23818 52126815 ~ 52127051 (+) True G1461299
TU1671771 lncRNA downstream 27596 52130593 ~ 52130810 (+) True G1461302
TU1671801 lncRNA downstream 73742 52176739 ~ 52176958 (+) True G1461331
NM_001124394.1 mRNA upstream 462080 51601530 ~ 51640412 (+) False csf1
XM_036947882.1 mRNA upstream 462223 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA upstream 462223 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA upstream 462223 51601464 ~ 51640269 (+) False csf1
XM_021568742.2 mRNA upstream 1039731 51052682 ~ 51062761 (+) True apobec2a
XM_036950110.1 mRNA downstream 87602 52190599 ~ 52273991 (+) False LOC110494060
XM_036950112.1 mRNA downstream 144794 52247791 ~ 52273991 (+) True LOC110494060
XM_021568754.2 mRNA downstream 171257 52274254 ~ 52280244 (+) True LOC110494061
XM_021568755.2 mRNA downstream 188229 52291226 ~ 52298261 (+) True LOC110494062
XM_021568759.2 mRNA downstream 239060 52342057 ~ 52363993 (+) False zc3h11a
TU1670644 other upstream 1011603 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1205048 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1325420 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1666786 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1918796 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2071017 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2153384 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2368708 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2368948 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3893651 55996648 ~ 55998174 (+) False G1466124

Expression Profile