RNA id: TU1671760


Basic Information

Item Value
RNA id TU1671760
length 245
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1461292
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52109215 ~ 52109575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcactgtagtatttttgcagactttagcaaaaacactacaataaatactatagtatttataccatattATAAACTGcgggttcaagccctgaatgctgattggctgaaagccgtggtgtAGCAcggttatgacaaaacatttgttactGCTCTAATGATGTTGGTAACCAgtgtataatagcaataaggcacaccccctcgtgccttgtTGCTAAAATATAGAgtatagtattttttcatgtggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671641 lncRNA upstream 6218 52102492 ~ 52102997 (+) True G1461181
TU1671638 lncRNA upstream 13813 52046698 ~ 52095402 (+) True G1461178
TU1671694 lncRNA upstream 115388 51993048 ~ 51993827 (+) True G1461227
TU1671611 lncRNA upstream 220371 51884237 ~ 51888844 (+) True G1461152
TU1671610 lncRNA upstream 221257 51884237 ~ 51887958 (+) False G1461152
TU1671635 lncRNA downstream 2148 52111723 ~ 52113123 (+) True G1461175
TU1671768 lncRNA downstream 17240 52126815 ~ 52127051 (+) True G1461299
TU1671771 lncRNA downstream 21018 52130593 ~ 52130810 (+) True G1461302
TU1671801 lncRNA downstream 67164 52176739 ~ 52176958 (+) True G1461331
TU1671921 lncRNA downstream 295766 52405341 ~ 52405572 (+) True G1461440
XM_036950103.1 mRNA upstream 4968 51967040 ~ 52104247 (+) False LOC110494059
XM_036950108.1 mRNA upstream 4968 51967044 ~ 52104247 (+) False LOC110494059
NM_001124394.1 mRNA upstream 468803 51601530 ~ 51640412 (+) False csf1
XM_036947882.1 mRNA upstream 468946 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA upstream 468946 51601444 ~ 51640269 (+) False csf1
XM_036950110.1 mRNA downstream 81024 52190599 ~ 52273991 (+) False LOC110494060
XM_036950112.1 mRNA downstream 138216 52247791 ~ 52273991 (+) True LOC110494060
XM_021568754.2 mRNA downstream 164679 52274254 ~ 52280244 (+) True LOC110494061
XM_021568755.2 mRNA downstream 181651 52291226 ~ 52298261 (+) True LOC110494062
XM_021568759.2 mRNA downstream 232482 52342057 ~ 52363993 (+) False zc3h11a
TU1670644 other upstream 1018326 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1211771 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1332143 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1673509 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1925519 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2064439 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2146806 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2362130 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2362370 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3887073 55996648 ~ 55998174 (+) False G1466124

Expression Profile