RNA id: TU1671801


Basic Information

Item Value
RNA id TU1671801
length 220
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1461331
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52176739 ~ 52176958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctttactccacataagagacgcatacaaagctctcacttgccgtccatttggcaaatctgaccataattctatcgtCCTGATTCCTTCTGAttaactaaagcaggaagtactagtgactcgctcaatacggaagtggtcagatgctatgctacaggactgtttttctagcacagacttgAATATGTTCagtgattcatccaatggcattgaggagtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671771 lncRNA upstream 45929 52130593 ~ 52130810 (+) True G1461302
TU1671768 lncRNA upstream 49688 52126815 ~ 52127051 (+) True G1461299
TU1671635 lncRNA upstream 63616 52111723 ~ 52113123 (+) True G1461175
TU1671760 lncRNA upstream 67164 52109215 ~ 52109575 (+) True G1461292
TU1671641 lncRNA upstream 73742 52102492 ~ 52102997 (+) True G1461181
TU1671921 lncRNA downstream 228383 52405341 ~ 52405572 (+) True G1461440
TU1672467 lncRNA downstream 238154 52415112 ~ 52415333 (+) True G1461938
TU1672481 lncRNA downstream 245210 52422168 ~ 52423010 (+) True G1461948
TU1672559 lncRNA downstream 326217 52503175 ~ 52503874 (+) True G1462021
TU1672699 lncRNA downstream 528365 52705323 ~ 52705583 (+) True G1462159
XM_036950107.1 mRNA upstream 54761 51967046 ~ 52121978 (+) False LOC110494059
XM_036950110.1 mRNA downstream 13641 52190599 ~ 52273991 (+) False LOC110494060
XM_036950112.1 mRNA downstream 70833 52247791 ~ 52273991 (+) True LOC110494060
XM_021568754.2 mRNA downstream 97296 52274254 ~ 52280244 (+) True LOC110494061
XM_021568755.2 mRNA downstream 114268 52291226 ~ 52298261 (+) True LOC110494062
XM_021568759.2 mRNA downstream 165099 52342057 ~ 52363993 (+) False zc3h11a
TU1670644 other upstream 1085850 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1279295 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1399667 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1741033 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1993043 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 1997056 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2079423 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2294747 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2294987 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3819690 55996648 ~ 55998174 (+) False G1466124

Expression Profile