RNA id: TU1672481



Basic Information


Item Value
RNA id TU1672481
length 551
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G1461948
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52422168 ~ 52423010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttgttgatgttgttgttgttgagtctGAGGTCCCGTAGTGAGCTTGGCAGGTTGGGGGGAACACGAGTCAGGTTATTATGTTGAAGGTACAGACGCTCCAACCCCTGCAGCTTGGCAAACACTCTTGCCGATTTTGTCCGTAGACAGAGCGTTGTGATGCATCATGACCCAGACAAGGTTGGTGGCGTTGGCCAGGGCAGAGTCTGGCATGGCGGAGATCTCATTGTGCTGCAGGTACAGATACTTCATCCTGGAAGGCACATTGGGCATGGCTGTCAAGCCACGCCCATCACAGTACATAGCGATGGGGAAGGAGGGCGGGCAGTCACACTCTGCAGGACACTCCCCTCCGGTGGTGTCAGCCAATAGGGAGCCCTCGACATAACCACGACCTCGCAGGGCGGACAGCCAAAGGAACGGGTCCTGCCTGCCTGGCGAGGCGAGGGACAGCGGCAGGACGCACGCCAAGAGGAACACACACAATCCACTCATGGTCACACACGCAGGTCACACACACGCAGAAAAGAGCTTACACACAAGTCTACCTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1672467 lncRNA upstream 6835 52415112 ~ 52415333 (+) True G1461938
TU1671921 lncRNA upstream 16596 52405341 ~ 52405572 (+) True G1461440
TU1671801 lncRNA upstream 245210 52176739 ~ 52176958 (+) True G1461331
TU1671771 lncRNA upstream 291358 52130593 ~ 52130810 (+) True G1461302
TU1671768 lncRNA upstream 295117 52126815 ~ 52127051 (+) True G1461299
TU1672559 lncRNA downstream 80165 52503175 ~ 52503874 (+) True G1462021
TU1672699 lncRNA downstream 282313 52705323 ~ 52705583 (+) True G1462159
TU1672712 lncRNA downstream 299270 52722280 ~ 52722667 (+) True G1462172
TU1672949 lncRNA downstream 357398 52780408 ~ 52780630 (+) True G1462399
TU1673085 lncRNA downstream 534007 52957017 ~ 52957711 (+) True G1462526
XM_021568764.2 mRNA upstream 19745 52398555 ~ 52402423 (+) True LOC110494068
NM_001160474.1 mRNA upstream 29030 52389226 ~ 52393138 (+) True LOC100301636
XM_036950114.1 mRNA upstream 41044 52377165 ~ 52381124 (+) True LOC118936244
XM_021568762.2 mRNA upstream 53818 52364095 ~ 52368350 (+) True LOC110494066
XM_036950113.1 mRNA upstream 58175 52342208 ~ 52363993 (+) True zc3h11a
XM_021568766.2 mRNA downstream 21705 52444715 ~ 52454863 (+) False zgc:113307
XM_021568767.2 mRNA downstream 21706 52444716 ~ 52454863 (+) True zgc:113307
XM_021568768.2 mRNA downstream 70761 52493771 ~ 52499544 (+) True LOC110494072
XM_021568769.2 mRNA downstream 216612 52639622 ~ 52699632 (+) True LOC110494073
XM_021568772.2 mRNA downstream 308388 52731398 ~ 52752182 (+) True LOC110494075
TU1670644 other upstream 1331279 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1524724 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1645096 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1986462 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 2238472 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 1751004 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 1833371 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2048695 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2048935 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3573638 55996648 ~ 55998174 (+) False G1466124

Expression Profile