RNA id: TU1674635


Basic Information

Item Value
RNA id TU1674635
length 348
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G1463968
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53967576 ~ 53968890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGTAGAAGTTGAGAaagcatcccaaaTAGCCATGTGTTGGTATACTGTATGCATGCACTGGAATTATTGGATTAAGGGCTTTCATAAAGTACATAGGCCTAGTAATAGAGTACATAGGCCTAGTAATAGAGTACATAGGCCTAGTAATAGAGTACATAGGCCTAGTAATAGAGTACATAGGCCTagtagggctcctgagtggtgcagtggtctaaggcactgcatctcagtgcaaaaggcatcactacagtccctggtttggatccaggctgtatcacatccggccgtgattgggagtcccataaggcggcacacaattggcccagcgtcgttcgagtttggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674616 lncRNA upstream 26046 53941328 ~ 53941530 (+) True G1463949
TU1674564 lncRNA upstream 70310 53896990 ~ 53897266 (+) True G1463899
TU1674552 lncRNA upstream 76737 53890285 ~ 53890839 (+) True G1463887
TU1674537 lncRNA upstream 88213 53879164 ~ 53879363 (+) True G1463872
TU1674536 lncRNA upstream 88668 53878636 ~ 53878908 (+) True G1463871
TU1674736 lncRNA downstream 48265 54017155 ~ 54017811 (+) True G1464065
TU1674770 lncRNA downstream 178149 54147039 ~ 54189617 (+) False G1464092
TU1674763 lncRNA downstream 195594 54164484 ~ 54198868 (+) True G1464091
TU1674772 lncRNA downstream 197341 54166231 ~ 54203457 (+) True G1464093
TU1674836 lncRNA downstream 212189 54181079 ~ 54181512 (+) True G1464156
XM_036950127.1 mRNA upstream 106440 53794018 ~ 53861136 (+) False LOC110493210
XM_036950128.1 mRNA upstream 106440 53794018 ~ 53861136 (+) False LOC110493210
XM_036950129.1 mRNA upstream 106440 53794018 ~ 53861136 (+) False LOC110493210
XM_036950130.1 mRNA upstream 106440 53794018 ~ 53861136 (+) True LOC110493210
XR_005037005.1 mRNA upstream 115877 53794018 ~ 53851699 (+) False LOC110493210
XM_021568799.2 mRNA downstream 607 53969497 ~ 53977112 (+) True LOC110494090
XM_036950132.1 mRNA downstream 60134 54029024 ~ 54043837 (+) True LOC110493211
XM_021568802.2 mRNA downstream 84093 54052983 ~ 54090080 (+) False LOC110494093
XM_036950133.1 mRNA downstream 105696 54074586 ~ 54090080 (+) True LOC110494093
XM_036950134.1 mRNA downstream 155535 54124425 ~ 54165315 (+) True LOC110494094
TU1670644 other upstream 2876687 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3070132 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3190504 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3531870 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3783880 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 205124 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 287491 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 502815 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 503055 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 2027758 55996648 ~ 55998174 (+) False G1466124

Expression Profile