RNA id: TU1674773


Basic Information

Item Value
RNA id TU1674773
length 905
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1464094
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54212866 ~ 54226850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTAACCACTAAGCTTTACCTACCTCAAACTGTAACATGGCGTTGGGAGGTATTTTGGGCGGGCATCCAGCTGACCCATAGGCATATGCTGGTTTACAGAGGAGCAtgcacacctctcctctctgcatAGAGGACACACCGATATCCAAGCCCTTAATCACCTGACCTGTGGAGTGATACAAAATTAGAGACATGACAAACAGATGTAGGCTACATAAGCAGTGACATATGGGCGTTACATACGGCGGATGAGTTAGATGAGTTCTTTCTTCCATACATACAGATGTCAAAAATGTAAGTATAATATAGAAGCTATATGTACAATATGTACATCTGTATGTCCTGATGACAGTTCTTCTTCAGCTGAAAAAGGTATCTGAGATGTTTAGAAACGAGTACCTCAGTAAGAGGCCGTCTCAGACTCGGACATACCCTTTCCCAGACTGAAGGTGAAGGGTTTTTTGCGTTCCATACTGGAGTCAAACTTCTTCCCATTGATTAGTTTGCCAGTGTAGTGTACTGCTACCTTGTCCCCAATCATGGGTCTGTCCCCATCCTCTCCCTGGTTTTTCACCACCTTGAGAACTCCCTCGTCTCTGCTAGGAGTGACGTCGATGCCCTTGGCAGCAAAGACCACAGCAGGAGACTGGTCATCCATGGACTGGTCCTTATCGGTGGTCATATCTGCATCTGGGCATGCCACTCTAACCCTATTTATAATTTTTATTTTCTCTTCTTCTGTTGCTCGTGTGCTATAACTTCAGCCGGTGTATCACTATACTGGTTCTGCAACGCACGTAAGCACGGTGATTTCAAACCCGCCCTCTCATAACCAACCAGGGTACTTAATGTTCTGTTTTTTACAGTCGAAACCCCCCGGCACTAGTGACGACCAACACGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674772 lncRNA upstream 9409 54166231 ~ 54203457 (+) True G1464093
TU1674763 lncRNA upstream 13998 54164484 ~ 54198868 (+) True G1464091
TU1674770 lncRNA upstream 23249 54147039 ~ 54189617 (+) False G1464092
TU1674836 lncRNA upstream 31354 54181079 ~ 54181512 (+) True G1464156
TU1674736 lncRNA upstream 195055 54017155 ~ 54017811 (+) True G1464065
TU1674866 lncRNA downstream 24190 54251040 ~ 54251278 (+) True G1464184
TU1674908 lncRNA downstream 103408 54330258 ~ 54332025 (+) True G1464223
TU1674939 lncRNA downstream 168468 54395318 ~ 54396302 (+) True G1464252
TU1674944 lncRNA downstream 184390 54411240 ~ 54411465 (+) True G1464256
TU1674953 lncRNA downstream 191280 54418130 ~ 54418396 (+) True G1464261
XM_036950138.1 mRNA upstream 13962 54173121 ~ 54198904 (+) False LOC110494095
XM_036950139.1 mRNA upstream 13962 54173968 ~ 54198904 (+) False LOC110494095
XM_036950141.1 mRNA upstream 13962 54173979 ~ 54198904 (+) False LOC110494095
XM_036950135.1 mRNA upstream 13962 54173980 ~ 54198904 (+) False LOC110494095
XM_036950136.1 mRNA upstream 13962 54178454 ~ 54198904 (+) False LOC110494095
XM_021568821.2 mRNA downstream 29477 54256327 ~ 54264613 (+) False LOC110494100
XM_021568817.2 mRNA downstream 38566 54265416 ~ 54276020 (+) True LOC110494098
LOC110493213 mRNA downstream 75612 54302462 ~ 54316540 (+) True LOC110493213
LOC110493214 mRNA downstream 90879 54317729 ~ 54318723 (+) True LOC110493214
XM_036950146.1 mRNA downstream 123995 54350845 ~ 54361786 (+) True slc2a11a
TU1674769 other upstream 23249 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3121977 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3315422 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3435794 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3777160 50430807 ~ 50435706 (+) False atxn7l2a
TU1674872 other downstream 29531 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 244855 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 245095 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1769798 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1788727 56015577 ~ 56016613 (+) False G1466131

Expression Profile