RNA id: TU1674866


Basic Information

Item Value
RNA id TU1674866
length 239
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1464184
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54251040 ~ 54251278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctaagcacgcagccaagacaacgcaggagtggcttccggacaagtctctgaatgtccttgagtggcccagccagagcccagacttgaaaccgatccaacatctctggagagacctgaaaatagctatgcagcaacgttccccatccaacctgacagagcttgagaggatctgcagagaagaatgtgagaaagtccccaaatacaggtgtaccaagcttgtagtgtcatacccaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674840 lncRNA upstream 8735 54195807 ~ 54242305 (+) True G1464160
TU1674773 lncRNA upstream 24190 54212866 ~ 54226850 (+) False G1464094
TU1674774 lncRNA upstream 24190 54220642 ~ 54226850 (+) True G1464094
TU1674772 lncRNA upstream 47583 54166231 ~ 54203457 (+) True G1464093
TU1674763 lncRNA upstream 52172 54164484 ~ 54198868 (+) True G1464091
TU1674908 lncRNA downstream 78980 54330258 ~ 54332025 (+) True G1464223
TU1674939 lncRNA downstream 144040 54395318 ~ 54396302 (+) True G1464252
TU1674944 lncRNA downstream 159962 54411240 ~ 54411465 (+) True G1464256
TU1674953 lncRNA downstream 166852 54418130 ~ 54418396 (+) True G1464261
TU1674956 lncRNA downstream 167905 54419183 ~ 54419400 (+) True G1464264
XM_036950135.1 mRNA upstream 52136 54173980 ~ 54198904 (+) False LOC110494095
XM_021568821.2 mRNA downstream 5049 54256327 ~ 54264613 (+) False LOC110494100
XM_021568817.2 mRNA downstream 14138 54265416 ~ 54276020 (+) True LOC110494098
LOC110493213 mRNA downstream 51184 54302462 ~ 54316540 (+) True LOC110493213
LOC110493214 mRNA downstream 66451 54317729 ~ 54318723 (+) True LOC110493214
XM_036950146.1 mRNA downstream 99567 54350845 ~ 54361786 (+) True slc2a11a
TU1674769 other upstream 61423 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3160151 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3353596 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3473968 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3815334 50430807 ~ 50435706 (+) False atxn7l2a
TU1674872 other downstream 5103 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 220427 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 220667 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1745370 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1764299 56015577 ~ 56016613 (+) False G1466131

Expression Profile