RNA id: TU1674908


Basic Information

Item Value
RNA id TU1674908
length 1748
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1464223
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54330258 ~ 54332025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGAAACGTTGTACTGTTGATGAAGATCCAAAAAGTTTATATTTGACAAGGTAAAGTAGTATTTGACATTGTCAATACTACTGTTATGTGCTGTACAGTCCATTATCCTTATTCTCTTCAAAATAAAAAGTGTACATGGAttacacactacatgaccaaaagtgtgtggagacctgctcgtcgaacatcccattccaaaatcacgggcattaatatggagttgatcccccctttgctgctataacagcctccagtcttctgggaaggctttccactacatgttgaaacattgctgaaGGGACTTGCtgaagggacttgcttccattcagccacaagagctttagggaggtcgggcactgatgttgggcgattaggcatggctcgcagtctgcgttccaattcatctcaaaggtgttcgatgggttgaggtcagggctctgtgcaggccagtcaagttcttccacaccgatctcaacaaaccatttctgtatggacctcgctttctgcaagggggcattgtcatgctgaaacaggaaagggtcatatccaaactgttgccacaaagttagaagcacagtattgtctagaatgtcagtgTATGGTGTAACGTTAAGTtcccccttcactggaactaaagggcctagcctgtgaccatgaaaaacagccccagaccattattcttctgccaccaaactttacagttgccactatgcattcaGATATGTAGCGTTCTCCTGTCATCCGCCAAACCCGgatttgtctgttggactgccagatggtgaagtgtgattcatcactccagaaaacgtgtttcctctgctccagagtccaatggcagcgagctccagccaacgcttgacattgctcatggtgatattaggtttgtgtgcggctgctcggccatggaaacccatttcatgaatttcccgactaacagttcttgtgctgaagttgcgtccagaggcagtttggaactcggcagtgaatgttgcaaccgaaGACAAGCACTCAGCGGTTTCATTCtgcgagcttgtgtggcctaccacttcacgactgagccgttgttgctcctagacgcttccacttcacaataacagtacttacagtggactggggcagctctagaagggcagaaatttgatgaactgacgtgttggaaaggtggcatcctttgactgtgtcacattgaaagtcactgagctcttcagtaaagccattctactggcAATGATTGTTAtgtagattgcatggctgtgtccgCAACAAGTGTGCCTGAAATatctgaatccacatacttttggccctGTAGTGTATTTAATTTGTATAGTTTACAACTTTACATTGTTCAGTAGGTGTGTTGTCCATGCTTACCTACATGACCATCAACTTTCACTGTATACACAGATATTGTTGCTTGAAATCTCATTTTCAGTTCATAACCAGATGTTGTTAACAGAAAAACATGAGTAATATCTGGGACACAAACTGTTGTATTGAGGCTTCTAAACAAAATATTCACAATACAATGGAAAAAGACTTCGCCCCTGTCTCAATCATTCATTTTATTTCACCCCCTCTAACTTTCCCTCCTTATTCAATTCTCTTTTAGCATCTCTTGCACATTTTTCATGCACCTGAAAGTTCAAAATATTTATCTACTGATAAAAATGTGGTTTCTGACTGCTTTCATTTAATCAAATAGAATTTTGTAGGCTTATGGAATAATAAGCATAGCCAAAATGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674866 lncRNA upstream 78980 54251040 ~ 54251278 (+) True G1464184
TU1674840 lncRNA upstream 87953 54195807 ~ 54242305 (+) True G1464160
TU1674773 lncRNA upstream 103408 54212866 ~ 54226850 (+) False G1464094
TU1674774 lncRNA upstream 103408 54220642 ~ 54226850 (+) True G1464094
TU1674772 lncRNA upstream 126801 54166231 ~ 54203457 (+) True G1464093
TU1674939 lncRNA downstream 63293 54395318 ~ 54396302 (+) True G1464252
TU1674944 lncRNA downstream 79215 54411240 ~ 54411465 (+) True G1464256
TU1674953 lncRNA downstream 86105 54418130 ~ 54418396 (+) True G1464261
TU1674956 lncRNA downstream 87158 54419183 ~ 54419400 (+) True G1464264
TU1674955 lncRNA downstream 88545 54420570 ~ 54420771 (+) True G1464263
LOC110493214 mRNA upstream 11535 54317729 ~ 54318723 (+) True LOC110493214
LOC110493213 mRNA upstream 13718 54302462 ~ 54316540 (+) True LOC110493213
XM_021568817.2 mRNA upstream 54238 54265416 ~ 54276020 (+) True LOC110494098
XM_021568821.2 mRNA upstream 65645 54256327 ~ 54264613 (+) False LOC110494100
XM_036950135.1 mRNA upstream 131354 54173980 ~ 54198904 (+) False LOC110494095
XM_036950146.1 mRNA downstream 18820 54350845 ~ 54361786 (+) True slc2a11a
XM_021568824.2 mRNA downstream 31161 54363186 ~ 54384146 (+) True LOC110494103
XR_005037006.1 mRNA downstream 94360 54426385 ~ 54434260 (+) False LOC118940476
XR_005037007.1 mRNA downstream 94360 54426385 ~ 54434260 (+) False LOC118940476
XR_005037008.1 mRNA downstream 94360 54426385 ~ 54434260 (+) False LOC118940476
TU1674872 other upstream 65642 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 140641 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3239369 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3432814 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3553186 50776529 ~ 50777072 (+) True G1459769
TU1674965 other downstream 139680 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 139920 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1664623 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1683552 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1683552 56015577 ~ 56016613 (+) True G1466131

Expression Profile