RNA id: TU1674939


Basic Information

Item Value
RNA id TU1674939
length 985
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G1464252
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54395318 ~ 54396302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACTCAAAAACAGTGTACAAAAACAGACATCTATAGAAAAGTATGCTTATATTGAAATATGTCCAAAGGTTTTATAACAAAACATGTaactccattttttttttttttttaagttcaaCGATCTTGCAGAGTACAGAGATAAAATACCAAGGTAACATACATATACAAATGTACATcttctgtgtgtgcatgtttttatGCGTACAAAAGTGTCATTGCAAGTCAATCTGCGCATGATTTACCATTTCAAGAGAAAGGTCCTTTTTTTTAATCTCGCGTTTCAAATCCACTGCCGTGCACAATCAGTATTGGGAAGGCACTTTGCAACAGACCAACAGAATAAGACAAGAAAACAGCAAAGGTAAGTATCCAAGCAATCAATCAAAACATCTATTATATTGAAGTACCAAACAGATGAGATAAATAAAACAATACCACCAGATGATTTGATTAGCATGTATGGGCGATCCCAAGTGTTGCCACAACCACCAATTATATAAGGGCATATTTCTAAACAGCATCGGCTCTCACTTatccaataaataacacaaaaCAGGCCTTTATAAATGATTTTTTACTCCATTCGCTGTGTGAAAAGCATCGCTATTTAGTGGGGATATAAAAAGAGCTTAATATGACCTAAACAGACTGATTGATCAAAGCCATGGGTCCTATCACTAAACTGGTAGTGTACACTACCAGAGCCAGGTAACAGCGGCGTGAactagacctgggttcaaatagtatttgatttagcttgcctggcacaatagaagagtcccaaaagtgcaaacccacCCATCAGTCACTCCAGCCAGACTCAAGCAAATGCTTTTCGAGTActttttgaacccaggtcttcAGTGAACAGCGAAACCTCCGTCACCATCCacacccccaaaaaaacatttatatCCAGAACAGTACACAGCAGACCATAGGTGTGCACTGTGAGGAAAACCTTTCAAATCAAACCACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674908 lncRNA upstream 63293 54330258 ~ 54332025 (+) True G1464223
TU1674866 lncRNA upstream 144040 54251040 ~ 54251278 (+) True G1464184
TU1674840 lncRNA upstream 153013 54195807 ~ 54242305 (+) True G1464160
TU1674773 lncRNA upstream 168468 54212866 ~ 54226850 (+) False G1464094
TU1674774 lncRNA upstream 168468 54220642 ~ 54226850 (+) True G1464094
TU1674944 lncRNA downstream 14938 54411240 ~ 54411465 (+) True G1464256
TU1674953 lncRNA downstream 21828 54418130 ~ 54418396 (+) True G1464261
TU1674956 lncRNA downstream 22881 54419183 ~ 54419400 (+) True G1464264
TU1674955 lncRNA downstream 24268 54420570 ~ 54420771 (+) True G1464263
TU1674954 lncRNA downstream 25228 54421530 ~ 54421821 (+) True G1464262
XM_021568824.2 mRNA upstream 11172 54363186 ~ 54384146 (+) True LOC110494103
XM_036950146.1 mRNA upstream 33532 54350845 ~ 54361786 (+) True slc2a11a
LOC110493214 mRNA upstream 76595 54317729 ~ 54318723 (+) True LOC110493214
LOC110493213 mRNA upstream 78778 54302462 ~ 54316540 (+) True LOC110493213
XM_021568817.2 mRNA upstream 119298 54265416 ~ 54276020 (+) True LOC110494098
XR_005037006.1 mRNA downstream 30083 54426385 ~ 54434260 (+) False LOC118940476
XR_005037007.1 mRNA downstream 30083 54426385 ~ 54434260 (+) False LOC118940476
XR_005037008.1 mRNA downstream 30083 54426385 ~ 54434260 (+) False LOC118940476
XR_005037009.1 mRNA downstream 30083 54426385 ~ 54434260 (+) False LOC118940476
XR_005037010.1 mRNA downstream 30083 54426385 ~ 54434260 (+) False LOC118940476
TU1674872 other upstream 130702 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 205701 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3304429 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3497874 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3618246 50776529 ~ 50777072 (+) True G1459769
TU1674965 other downstream 75403 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 75643 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1600346 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1619275 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1619275 56015577 ~ 56016613 (+) True G1466131

Expression Profile