RNA id: TU1674954


Basic Information

Item Value
RNA id TU1674954
length 292
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G1464262
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54421530 ~ 54421821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGCATCCATAACAATGCAAAGCCAATGGGATCCTTTTGGGGGACAATCCAAAAGTTAAAGTATGAAGAACCCAGCATGACATGCCTTCTCTCACAGAGTCAGTCCTCTTCCTGGACCGTTTGGGTCTGCGCTTGTCCTCCTCCAGGATCTTGTCGTCAAAGCCAATGAGCTCTATAGTCTCTGATTGGCTGGTTGGGCCCCCTGAGAACCACTCTGGCTCCTCTTCCGCTTCGTTCCTTCTCCTCTCACTGAACACACGCTTGTCCCCAAAGTCTCGCtgcagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674955 lncRNA upstream 759 54420570 ~ 54420771 (+) True G1464263
TU1674956 lncRNA upstream 2130 54419183 ~ 54419400 (+) True G1464264
TU1674953 lncRNA upstream 3134 54418130 ~ 54418396 (+) True G1464261
TU1674944 lncRNA upstream 10065 54411240 ~ 54411465 (+) True G1464256
TU1674939 lncRNA upstream 25228 54395318 ~ 54396302 (+) True G1464252
TU1674957 lncRNA downstream 383 54422204 ~ 54422623 (+) True G1464265
TU1674974 lncRNA downstream 4600 54426421 ~ 54433283 (+) True LOC118940476
TU1674977 lncRNA downstream 11736 54433557 ~ 54435032 (+) True G1464280
TU1674980 lncRNA downstream 15830 54437651 ~ 54437938 (+) True G1464283
TU1674976 lncRNA downstream 21946 54443767 ~ 54444828 (+) True zgc:172271
XM_021568824.2 mRNA upstream 37384 54363186 ~ 54384146 (+) True LOC110494103
XM_036950146.1 mRNA upstream 59744 54350845 ~ 54361786 (+) True slc2a11a
LOC110493214 mRNA upstream 102807 54317729 ~ 54318723 (+) True LOC110493214
LOC110493213 mRNA upstream 104990 54302462 ~ 54316540 (+) True LOC110493213
XM_021568817.2 mRNA upstream 145510 54265416 ~ 54276020 (+) True LOC110494098
XR_005037006.1 mRNA downstream 4564 54426385 ~ 54434260 (+) False LOC118940476
XR_005037007.1 mRNA downstream 4564 54426385 ~ 54434260 (+) False LOC118940476
XR_005037008.1 mRNA downstream 4564 54426385 ~ 54434260 (+) False LOC118940476
XR_005037009.1 mRNA downstream 4564 54426385 ~ 54434260 (+) False LOC118940476
XR_005037010.1 mRNA downstream 4564 54426385 ~ 54434260 (+) False LOC118940476
TU1674872 other upstream 156914 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 231913 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3330641 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3524086 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3644458 50776529 ~ 50777072 (+) True G1459769
TU1674965 other downstream 49884 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 50124 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1574827 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1593756 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1593756 56015577 ~ 56016613 (+) True G1466131

Expression Profile