RNA id: TU1674980


Basic Information

Item Value
RNA id TU1674980
length 288
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1464283
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54437651 ~ 54437938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatttaattttggattggagatgcttaatatgagtctggaaggagagtttacagtctagccagacacctaggtatttatagttgtccacatattctaagtcagaaccgtccagagtagtgatggtgggcgggtgcgggcagcgataagttgaagagcatgcattttattttaatagcatttaagagcagttggaggccacggaaggagtgttgtatggcgttgaagctcgtttggaggttttataacagtgtccaaagaagggcccgATGTTTACAGTATGGaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674977 lncRNA upstream 2619 54433557 ~ 54435032 (+) True G1464280
TU1674974 lncRNA upstream 4368 54426421 ~ 54433283 (+) True LOC118940476
TU1674957 lncRNA upstream 15028 54422204 ~ 54422623 (+) True G1464265
TU1674954 lncRNA upstream 15830 54421530 ~ 54421821 (+) True G1464262
TU1674955 lncRNA upstream 16880 54420570 ~ 54420771 (+) True G1464263
TU1674976 lncRNA downstream 5829 54443767 ~ 54444828 (+) True zgc:172271
TU1675340 lncRNA downstream 127847 54565785 ~ 54566048 (+) True G1464609
TU1675346 lncRNA downstream 184868 54622806 ~ 54624208 (+) True G1464615
TU1675347 lncRNA downstream 186386 54624324 ~ 54627415 (+) True G1464616
TU1675373 lncRNA downstream 195156 54633094 ~ 54633537 (+) True G1464641
XR_005037006.1 mRNA upstream 3391 54426385 ~ 54434260 (+) False LOC118940476
XR_005037007.1 mRNA upstream 3391 54426385 ~ 54434260 (+) False LOC118940476
XR_005037008.1 mRNA upstream 3391 54426385 ~ 54434260 (+) False LOC118940476
XR_005037009.1 mRNA upstream 3391 54426385 ~ 54434260 (+) False LOC118940476
XR_005037010.1 mRNA upstream 3391 54426385 ~ 54434260 (+) False LOC118940476
XM_036950163.1 mRNA downstream 5659 54443597 ~ 54453753 (+) False zgc:172271
XM_021568851.2 mRNA downstream 15415 54453353 ~ 54461322 (+) True sirt4
XM_021568852.1 mRNA downstream 34021 54471959 ~ 54473886 (+) False LOC110494110
XM_021568854.2 mRNA downstream 49122 54487060 ~ 54500326 (+) True frs3
XM_021568883.2 mRNA downstream 154617 54592555 ~ 54622676 (+) True slc6a11a
TU1674872 other upstream 173035 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 248034 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3346762 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3540207 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3660579 50776529 ~ 50777072 (+) True G1459769
TU1674965 other downstream 33767 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 34007 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1558710 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1577639 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1577639 56015577 ~ 56016613 (+) True G1466131

Expression Profile