RNA id: TU1676833


Basic Information

Item Value
RNA id TU1676833
length 2290
lncRNA type read_through
GC content 0.38
exon number 3
gene id G1466021
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 55825540 ~ 55827889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTGTTTATTTTTATTAGAGAAAATATGAAGCAAGCACAAAATGCTTTAAAACAATCAACTGTGTATACAGTATAGGATAATCACCCATCTAGTAAAGAGCACCCTTGTAAAATAAAGGGCCCTGTAGTTGCAGTGTCACAAAAATAGAATGCAAAGATGCATTTTCACATGTCATTTGTGACTTGTACAATCGAGAAAACAAACATAAGAGTCCCTGACGGTAATAATTTAATTTAATGGATGTTTGAAAAATGAACTAAGCTGAGCAGAATATGGTGATAAGACTAAAATGTATATGTATCTTAGAATCCTAAGATGAAAGGTATTAAATATATTGCCAGAGTTGATATTAGGTGATGCAAGATACACTGTTAACTTGAGGCAGAATCCCAACACAAATGACATGAATAACTAACTCCCTCTCACCTAAATCATGCTGTTTGTCGCCGATTTGGACAGAAGTTTGTGTACATTTTAACTTGGGGATTCTGCCTTAAATGCTCATTGCCTCTTTAGAGACGTAAAAATGCAGGTTTGATGAGAGGGGGGAAAAGTTTCTCCTTAGTGGTAGCTGTATGGTTGTACAGCAAGAAAACAATCAGTTCTTCCTTATTTTATATTCACAATGGCTTCTACTACATTATCACGCCACAGACTTGCAAATAATATTCTCCGTGGATGTAAGACTATTCCGCTACTTTCCCCACCCCCACTTCAAAGGCACGTGCACTGGTGGCCCATGTGTCTGTCATCCatgtctatttatttatttattgaataaatAGTTTTGACAGTAACCCTCCAACAAGTCTAATGCTTCTTAGGTAGTTCTATGAGTTTTAGTTTAGAAAACAATCTCCGCAGAAGCGACAGTTACAGGGATGGTAAAAAGAGATCTTGATTGTCGTAGTGACATCAGGGGAAACTGGGCAGAAGAAAGTTGTTACAGAACTGCTGTATTTGAAGCACATCTTTAATTGAGCCTCTCATTCTCCTTAATTGCCGACCTCAACACTTTAAGGAAAGAGACTAACTGTATAGGAAGCTCTGggatagtgctgagcgattagtgttTTTGGAGGTCTGTTCGGTTTCGGTtagattatttaaaaaataatcacagttttgctaatttttttaaaacattcAATGCAATATGcattgtgggttgaatgctgttacacagaataaaacaattaataaaagtcccatgatggtagactgcccattactgcttatcaattactaaccatcatttattcacattactttaataaaatatttcagttgtggtgtatattacatttattttttatttttatgaatatattatttaattccaagtcatctcTAAAGAGCTGCTGCCTAATGCTGTCTGAAAAGAAATCACTATTTTGCAGTTCTTCAAATTAAATGAGGCACACTTTTATGAcggctgaataccaactatcaaccACTTAGATCATGTGTTTACCTCACGGAACAACAGCTGCTCTCTATATCCCTTAATGATCGCGCATTCTTCTCTCTTGTGTAGCAGTCATAACAGAAACACAGAACGGATCTGATTTATCTTTAGAGAAACTGTGTGCAGTGAGCTTACAGGAAAAATAACGGAActaaatgaaatacaaataatTGATTCAACGTcagttgttgttgtttaaaaacccgaaaaataacacatttcagttaatcgctcagcactactctggggacaggggggggggtccagagaAACAGCGTTACGCTGGTGTTCATAGGTGCATAGTTAATTGCCTGCTCAACACACTGTCctaaaaacaattaaataaacAATTCAGGACACTGTCTCAAAGTGCAGCAGGTGTCTCAAAACATCACTTTCTTTCCTTACGGTGGACCACAAAGATTGGGTACAGGTAACTAAATAGCTCTGATTTGATAGCACCAGCACTCTGCTGTACATGTGACAGAAATTTGTGAGAACAGTAAAGACAGAGTTGCTTCTTCAAGCTGGATCTTTAAAACAGGGTTTTTTCGTCTGCAACGTCCTTATATAAAACGTTGGCACTGAGGTGAGCTTTGCTTTTCAATTTTCATCCAGCACCGTTAGGGAGGAAACAGACGGCACAGCGCTCCCTCTAGCGGTTGGTCATTTCACAACAGTCTTGCCGGTCATTCATCAGTTTCGCAAAATAAAATGTTCCTCCTGGTCTTTCCATTGAGTCCGTCCACACTACCTGTGTCCCAGCTGGTTATTCATGAGGCCACTGAAAGAGGATTCCTCTGACTCGGAGCTCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1676827 lncRNA upstream 6345 55817061 ~ 55819195 (+) False LOC110494141
TU1676826 lncRNA upstream 6515 55817061 ~ 55819025 (+) False LOC110494141
TU1676828 lncRNA upstream 7211 55817061 ~ 55818329 (+) False LOC110494141
TU1676825 lncRNA upstream 7211 55817148 ~ 55818329 (+) True LOC110494141
TU1676734 lncRNA upstream 219151 55606145 ~ 55606389 (+) True G1465932
TU1676894 lncRNA downstream 103320 55931209 ~ 55932588 (+) True G1466081
TU1676908 lncRNA downstream 123683 55951572 ~ 55952010 (+) True G1466095
TU1676909 lncRNA downstream 124170 55952059 ~ 55952379 (+) True G1466096
TU1676910 lncRNA downstream 124524 55952413 ~ 55952619 (+) True G1466097
TU1676911 lncRNA downstream 125015 55952904 ~ 55953120 (+) True G1466098
XM_021568914.2 mRNA upstream 7214 55811948 ~ 55818326 (+) False LOC110494141
XR_005037250.1 mRNA upstream 35929 55789483 ~ 55789611 (+) True LOC118940664
XR_005037249.1 mRNA upstream 36502 55788910 ~ 55789038 (+) True LOC118940663
XR_005037245.1 mRNA upstream 37224 55788168 ~ 55788316 (+) True LOC118940659
XR_005037248.1 mRNA upstream 38234 55787178 ~ 55787306 (+) True LOC118940662
XM_036948421.1 mRNA downstream 105683 55933572 ~ 55946587 (+) True LOC110493222
XM_021568904.2 mRNA downstream 202234 56030123 ~ 56039321 (+) False LOC110494134
XM_021568902.2 mRNA downstream 202235 56030124 ~ 56039321 (+) True LOC110494134
XM_036950221.1 mRNA downstream 228402 56056291 ~ 56081057 (+) False LOC110494131
XM_021568899.2 mRNA downstream 228403 56056292 ~ 56081057 (+) False LOC110494131
TU1674965 other upstream 1351068 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other upstream 1351668 54471945 ~ 54473872 (+) True LOC110494110
TU1674872 other upstream 1560924 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 1635923 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 4734651 51080132 ~ 51090889 (+) False G1460249
TU1676946 other downstream 168759 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 187688 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 187688 56015577 ~ 56016613 (+) True G1466131
TU1676992 other downstream 260289 56088178 ~ 56127481 (+) True LOC110494143
TU1677057 other downstream 391353 56219242 ~ 56220946 (+) True G1466224

Expression Profile