RNA id: TU1677606


Basic Information

Item Value
RNA id TU1677606
length 1703
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1466708
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56494854 ~ 56506137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGTTTAACATATTTATTcacacaaaacacatttttttagtAAGGCAACAATATATACAGACAATGATTTATATATGAATACcatacgtacagttgaagtcggaagtttacatacaccttagccaaatacatttggctaaattcctgacatttaatcctagtaaaaattccctgtcttaggtcagttaggatcaccactttattttaagattgtgaaatgtcagaataatagtagagagaatgatttatttaagcttttatttctttcatcacattcccagtgggtcagaagttcacatacactcaatttgtatttggtagcattgcctttaaattgtttaacttgggtcaaacatttcaggtagcttcccacaataagttaggtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcacatgctttttcagttctgcccacacattttctataggattgtggtCATGGAgctgtgatggctactccaatactgatgccatctattttgtgaagtgcaccagtccctcttgcagcaaagcacccccacaacatgatgctcccacccctgtgcttcacggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacgatggtcattattgccaacagttccatttttgtttcatcagaccagaggacatttctccaaaaagtacaatctttgtccccatgtgcagttgcaaaccgtagtctggcttttttatggaggttttggagcagtggcttcttccttgctgagcggcctttcaggttatgtcgatataggactcgttttactgtgaatatagatacttttgtactggtttcctccagcatcttcacaaggtcctttgctgttgttctgggattgatttgcactttttgcactaaagtacgttcatctctaggagatcgAACACGTCtccctcctgagcggtatgacggctgcatggtcccatggtgtttatacttgtgtactattgttttgtgcagatgaacgtggtaccttcaggcgtttggaaatagtctacaattctttttctgaggtcttggctgaattgttttgatttccccatgatgtcaagcagagaggcactgagtttgaaggtaggccttgaaatacacccacaggtacacctccaattgactcaaatgatatcaattagcctatcagaagcttctaaagccatgacatcattttctggaattttccaagctgttcaaaggcacagtcaacttagtgtatgtagacttctgacccactggatttgtgatacagtgaattacaagtgaaataatctgtctgtaaacaattgttggaaaaatgacctgtgtaatgcataaagtagatgtcctaactgacttgccaaaactatagtttgttaacaagaaatttgtggtgtggttgaaaaacgagttttaatgattccaacctaagtgtatgtaaacttccgacttcaactgtacatatggtATTCATATATAAATCATTGTCTATATATATTGTGTTGCCTtactaaaaaaaatgtattttgttttgtgtgaatAAATATGTTAAACTGGTATGGTATTTTTGTCCTGGAAAAGAGGGTATTGAAATGACTTTTCACACGTTTACATTATCTTCATGCAACCACGTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677596 lncRNA upstream 11442 56480987 ~ 56483412 (+) True G1466702
TU1677476 lncRNA upstream 120128 56369855 ~ 56374726 (+) True LOC110494151
TU1677516 lncRNA upstream 151631 56343020 ~ 56343223 (+) True G1466632
TU1677515 lncRNA upstream 152312 56342327 ~ 56342542 (+) True G1466631
TU1677513 lncRNA upstream 152729 56341261 ~ 56342125 (+) True G1466630
TU1677604 lncRNA downstream 27531 56533668 ~ 56536745 (+) True G1466707
TU1677652 lncRNA downstream 53376 56559513 ~ 56559838 (+) True G1466742
TU1677689 lncRNA downstream 138377 56644514 ~ 56644724 (+) True G1466775
TU1677706 lncRNA downstream 162413 56668550 ~ 56671026 (+) False G1466787
TU1677710 lncRNA downstream 162413 56668550 ~ 56671026 (+) False G1466787
XM_021568931.2 mRNA upstream 21079 56461343 ~ 56473775 (+) False rbck1
XM_021568932.2 mRNA upstream 21079 56461343 ~ 56473775 (+) False rbck1
XM_021568933.2 mRNA upstream 21079 56461343 ~ 56473775 (+) True rbck1
XM_021568930.2 mRNA upstream 42477 56447092 ~ 56452377 (+) False LOC110494152
XM_036950240.1 mRNA downstream 47368 56553505 ~ 56556106 (+) True LOC110494158
LOC110494160 mRNA downstream 69600 56575737 ~ 56584088 (+) False LOC110494160
XM_021568951.2 mRNA downstream 78722 56584859 ~ 56591591 (+) False LOC110494159
XM_036950246.1 mRNA downstream 78727 56584864 ~ 56591591 (+) True LOC110494159
XM_021568958.2 mRNA downstream 92268 56598405 ~ 56617378 (+) False LOC110494162
TU1677057 other upstream 273908 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 367373 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 478241 56015577 ~ 56016613 (+) False G1466131
TU1676957 other upstream 478241 56015577 ~ 56016613 (+) True G1466131
TU1676946 other upstream 496680 55996648 ~ 55998174 (+) False G1466124
TU1677617 other downstream 74254 56580391 ~ 56582721 (+) True LOC110494160
TU1677978 other downstream 611565 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 640376 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 643166 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 972660 57478797 ~ 57483589 (+) True G1467159

Expression Profile