RNA id: TU1677714



Basic Information


Item Value
RNA id TU1677714
length 1997
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G1466787
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56668550 ~ 56671026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCCTAATTTATTAATCAATTCTGCTCTACATTCAACATAGAATCATGACAGAAATGTTACCTACATAGTGTCTGTGTCAGATGAAACCTCTTATCTCCAAAATAGAAAACAGCCATACTTTACCATTAACAAACATACAATTAAGAAACTTCAGAagctattttgaatacattttcttGGCCCTAGAGTCGATGCATGTAAAAATGTCAATGCACAATGAAAAAAATGAATGGTTACGAAGTTACGAGGTTTTCCTTCGAAAGCAACGATAGGATAAATATACAagtatatttctatgtttataCATATATTATGTGTAACATTATAATGGATTGTGTAGCTGTTTATAAATGACTGTATGTCCTTTTATTATTTCTAGTAATAAAACAGTACCAGTAATAACGAGATAACTGAGACAAATCCCATGATGTAGCCTACCATATGTTGTTACTGCCCTCTAGTGCTATAAGAAAACAGTGGTATATGTACATTTCTCAGTTTCATAGAAAACAGACTGTTTAATCAATACATATATGTTGTAAGAACCTTTTTCATTCAAATCAATAATACATTTCTTGGGGAAAACAAGCAAATCTCATTAATGGTCTAGGTGAtgtgtgtggaggtggcaggTAGGTCACAATGCAGAAACAACTTTAAGGGGAAACCACTACTCTAGGTGATGCAGAAACAACATTATGGGGAAATCACTACTCTAGGTGATGCAGAAGCAACATTATGGGGAAACCACTACTCTAAGTGATGCAGAAGCTACATTATGGGGAATCCACTACTCAAGGTGATGCAGAAATAATATTATGGTGAAACCACTACTCTATGTGATGTAGAAACACTATTATGGTGAAACCACTACTCTAGGTGATGTATAAACAATATTATGGGGAATCCACTACTCTATGTGATGTAGAAACACTATTATGGTGAAACCACTACTATAGGTGATGTAGAAACACTATTATGGTGAAACCACTACTATAGGTGATGTAGAAACACTATTATGGTGAAACCACTACTCTAAGTGATGCATAAACAATATTATGGGGAAACCACTACTCTAGGTGATGCAGAAACAATATTATGGGGAAACCACTACTCTAAGTGATGCATAAACAATATTATGGGGAAACCACTACTCTAGGTGATGCAGAAACAATATTATGGGGAAACCACTACTCTAGGTGATGCAGAGGAAACATTATGGGGAAACCACTACTCTAAAGTGATGCAGAAACAATATTATGGGGAAACCACTACTATAGGTGATGCAGAAACAATATTATGGGGAAACCACTAGTCTAGGTGATGCAGAGGAAACATTATGGGGAAACCACTACTCTAGGTGATGCAGAGGAAACATTATGGGGAAACCACTACTCTAAGTGATGCAGAAACAATATTATGGGGAAATCACTACTCTAGGTGATGCAGAGGAAACATTATGAGGAAGCCACTAATCTAAGTGATGGGGAAACAGCTACTCTAGGTGATACAGAAACAATGTTATGGGGATTCTAGATTACGTGTGTGTGGAGATGTTATGGGGGAACCAGTGTTCTAGATGATGTGTGTGGAGTCGGTGCAGGGAACTAGTGTTctaggtgatgtgtgtgtgatggagttGGTGCAGGGAAGCAGTGTTCTAcgtcagtggttcccaaccattTTCGGTTATTGTAACACAAACAGTTTTTTGCTCTGCCTGCAGTACCCCTGAATTACACCCTCATGTGCGTTTTACCAGTAAGCCTATGGTCTCATCGGTCTTCTCAAGTATTTATTTCCCCTGGTTGGGAAATAATGTTCTaggtgatgtgtgtgtggaggtggcacatgAAGTCTCCCCTGGTGGTGGTGTGGCCGGGGAATACAGCATTACAGAAGTCACACACATGAGACTGCAGCGCCACCTCTGACATCAGCATCATCCCCCCGGTCTGGCTTAGAAACTCACTGTCCAGGAAGGAGCCACATGCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1677689 lncRNA upstream 23826 56644514 ~ 56644724 (+) True G1466775
TU1677652 lncRNA upstream 108712 56559513 ~ 56559838 (+) True G1466742
TU1677604 lncRNA upstream 131805 56533668 ~ 56536745 (+) True G1466707
TU1677606 lncRNA upstream 162413 56494854 ~ 56506137 (+) True G1466708
TU1677596 lncRNA upstream 185138 56480987 ~ 56483412 (+) True G1466702
TU1677757 lncRNA downstream 43529 56714555 ~ 56714779 (+) True G1466824
TU1677723 lncRNA downstream 44960 56715986 ~ 56716374 (+) True G1466791
TU1677727 lncRNA downstream 50525 56721551 ~ 56722289 (+) True LOC118940478
TU1677758 lncRNA downstream 55078 56726104 ~ 56726343 (+) True G1466825
TU1677766 lncRNA downstream 64104 56735130 ~ 56735350 (+) True G1466833
XM_021568968.2 mRNA upstream 696 56650088 ~ 56667854 (+) False LOC110494166
XM_021568971.2 mRNA upstream 696 56650088 ~ 56667854 (+) True LOC110494166
XM_021568969.2 mRNA upstream 2087 56650088 ~ 56666463 (+) False LOC110494166
XM_021568970.2 mRNA upstream 2087 56650088 ~ 56666463 (+) False LOC110494166
XM_021568960.2 mRNA upstream 39543 56622540 ~ 56629007 (+) True LOC110494163
XR_005037020.1 mRNA downstream 29572 56700598 ~ 56722352 (+) False LOC118940478
XM_021568987.2 mRNA downstream 145831 56816857 ~ 56829761 (+) False si:ch73-190f16.2
XM_021568986.2 mRNA downstream 146264 56817290 ~ 56829761 (+) False si:ch73-190f16.2
XM_036950252.1 mRNA downstream 192408 56863434 ~ 56868723 (+) False LOC110494174
XM_021568990.2 mRNA downstream 192417 56863443 ~ 56871212 (+) True LOC110494174
TU1677617 other upstream 85829 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 447604 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 541069 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 651937 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 446676 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 475487 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 478277 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 807771 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 827356 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile