RNA id: TU1677723



Basic Information


Item Value
RNA id TU1677723
length 389
lncRNA type intronic
GC content 0.33
exon number 1
gene id G1466791
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56715986 ~ 56716374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccacatTACGAAAACTCACAAATATAAAGTATTTATGTTATAAGAATACACACAGAAAAAGAAGCAGGAAACATTTTTATACATCTGTATACTGTGTTAGAACGCTGAAGTGCTCTTAGCTGCTCGTGGTTTTGTCACATTTCACCATGTAATGACTTAAGAAATCACTTGAAGTTCATTTcaagaagaaaataaaaacaacataTAATAAAACTGCACACACTCCTCCTGAAGGAGCGTGTGTAAGGCAACATTTGCAGTAGCAGaggtttatatacacacacagttaagGATAGAAAGCTATAGAGTCACATGTTTGAGTGGATCCATGTTACAGCTATACTATGCTATAATCGTTCattcataaaaataaatgtatttatgaTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1677757 lncRNA upstream 1207 56714555 ~ 56714779 (+) True G1466824
TU1677706 lncRNA upstream 44960 56668550 ~ 56671026 (+) False G1466787
TU1677710 lncRNA upstream 44960 56668550 ~ 56671026 (+) False G1466787
TU1677714 lncRNA upstream 44960 56668550 ~ 56671026 (+) False G1466787
TU1677715 lncRNA upstream 44960 56668550 ~ 56671026 (+) True G1466787
TU1677727 lncRNA downstream 5177 56721551 ~ 56722289 (+) True LOC118940478
TU1677758 lncRNA downstream 9730 56726104 ~ 56726343 (+) True G1466825
TU1677766 lncRNA downstream 18756 56735130 ~ 56735350 (+) True G1466833
TU1677768 lncRNA downstream 20976 56737350 ~ 56737753 (+) True G1466835
TU1677783 lncRNA downstream 48827 56765201 ~ 56765931 (+) True G1466848
XM_021568968.2 mRNA upstream 48132 56650088 ~ 56667854 (+) False LOC110494166
XM_021568971.2 mRNA upstream 48132 56650088 ~ 56667854 (+) True LOC110494166
XM_021568969.2 mRNA upstream 49523 56650088 ~ 56666463 (+) False LOC110494166
XM_021568970.2 mRNA upstream 49523 56650088 ~ 56666463 (+) False LOC110494166
XM_021568960.2 mRNA upstream 86979 56622540 ~ 56629007 (+) True LOC110494163
XM_021568987.2 mRNA downstream 100483 56816857 ~ 56829761 (+) False si:ch73-190f16.2
XM_021568986.2 mRNA downstream 100916 56817290 ~ 56829761 (+) False si:ch73-190f16.2
XM_036950252.1 mRNA downstream 147060 56863434 ~ 56868723 (+) False LOC110494174
XM_021568990.2 mRNA downstream 147069 56863443 ~ 56871212 (+) True LOC110494174
XM_021568996.2 mRNA downstream 205321 56921695 ~ 56966874 (+) True syt6b
TU1677617 other upstream 133265 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 495040 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 588505 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 699373 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 401328 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 430139 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 432929 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 762423 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 782008 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile