RNA id: TU1677965



Basic Information


Item Value
RNA id TU1677965
length 409
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1467007
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57067853 ~ 57068261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttgagaacaagttctcatttgcaactgcgacctggccaagataaagcgtagcaattcgacacgtacaacaacacagagttacacatggaataaacaaaacatacagtcaataatacagtagaacaaaagaaaacaaaaagtctatatacagtgaatgcaaatgaggtaagttaaggaaataaataggccatggtggcgaagtaattacaatatagcaattaaacactggaatggtagatcggcagaagatgaatgtgcaggtagagatactggggtgcaaaggagcaaaataaataaataccagtagggagatgaggtaggtagatagatgggctgtttacagatgggctatgtacaggtgcagtgatctgtaagctgctcggacagctggtgcttaaagctagtgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1677952 lncRNA upstream 2956 57064549 ~ 57064897 (+) True G1466999
TU1677951 lncRNA upstream 3671 57063981 ~ 57064182 (+) True G1466998
TU1677950 lncRNA upstream 4698 57062917 ~ 57063155 (+) True G1466997
TU1677837 lncRNA upstream 40940 57024788 ~ 57026913 (+) True inavab
TU1677886 lncRNA upstream 95127 56969324 ~ 56972726 (+) True G1466939
TU1677967 lncRNA downstream 1302 57069563 ~ 57070276 (+) True G1467009
TU1677955 lncRNA downstream 44756 57113017 ~ 57116744 (+) True G1467001
TU1677992 lncRNA downstream 78227 57146488 ~ 57147141 (+) False G1467030
TU1677993 lncRNA downstream 78252 57146513 ~ 57147141 (+) True G1467030
TU1678004 lncRNA downstream 105288 57173549 ~ 57173965 (+) True G1467041
XM_021569005.2 mRNA upstream 791 57065044 ~ 57067062 (+) True rabif
XM_021567442.2 mRNA upstream 7402 57051596 ~ 57060451 (+) False adipor1a
XM_021567443.2 mRNA upstream 7402 57051596 ~ 57060451 (+) False adipor1a
NM_001281345.1 mRNA upstream 9012 57053204 ~ 57058841 (+) True adipor1a
XM_021569004.2 mRNA upstream 16865 57042425 ~ 57050988 (+) False LOC110494182
XM_021569006.2 mRNA downstream 5660 57073921 ~ 57105178 (+) True LOC110494185
XM_021569007.2 mRNA downstream 37557 57105818 ~ 57111562 (+) False nelfcd
XM_021569008.2 mRNA downstream 37557 57105818 ~ 57111562 (+) False nelfcd
XM_021569010.2 mRNA downstream 37567 57105828 ~ 57111562 (+) True nelfcd
XR_002469101.2 mRNA downstream 108190 57176451 ~ 57223261 (+) False nramp-alpha
TU1677617 other upstream 485132 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 846907 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 940372 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 1051240 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 49441 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 78252 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 81042 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 410536 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 430121 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile