RNA id: TU1678098



Basic Information


Item Value
RNA id TU1678098
length 287
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1467127
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57362763 ~ 57363049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccaagcaagtctcttcttattattggtgtcctttagtagtggtttctttgcagcaattcgaccatgaacgcctgattcacgcagtctcctctgaaaagttgatgttgagatgtgtctgttactttaactctgaagcatttatttgggctgcaacttCGGAGGCTGGAAtgtgtaggtgtccaaacttttgactggtactgtatgtaaataaggtatctgtttttttttatcacatttgcatacatttctaaaaaacctgttttgcttcaTCATttttgggttattgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1678097 lncRNA upstream 1381 57361122 ~ 57361382 (+) True G1467126
TU1678095 lncRNA upstream 3127 57359389 ~ 57359636 (+) True G1467124
TU1678093 lncRNA upstream 9110 57351520 ~ 57353653 (+) True G1467122
TU1678094 lncRNA upstream 11405 57349964 ~ 57351358 (+) True G1467123
TU1678092 lncRNA upstream 13740 57348464 ~ 57349023 (+) True G1467121
TU1678105 lncRNA downstream 12875 57375924 ~ 57376166 (+) True G1467134
TU1678107 lncRNA downstream 13914 57376963 ~ 57377183 (+) True G1467136
TU1678109 lncRNA downstream 19121 57382170 ~ 57382398 (+) True G1467138
TU1678144 lncRNA downstream 65440 57428489 ~ 57429134 (+) True G1467170
TU1678157 lncRNA downstream 78401 57441450 ~ 57441664 (+) True G1467180
XM_036950257.1 mRNA upstream 33036 57305804 ~ 57329727 (+) False tegt
LOC110493228 mRNA downstream 105704 57468753 ~ 57474567 (+) False LOC110493228
XM_021569041.2 mRNA downstream 135256 57498305 ~ 57545482 (+) False LOC110494206
XM_021569042.2 mRNA downstream 135259 57498308 ~ 57545482 (+) False LOC110494206
XM_021569032.2 mRNA downstream 292900 57655949 ~ 57665568 (+) False LOC110494197
XM_021569033.2 mRNA downstream 292900 57655949 ~ 57665568 (+) True LOC110494197
TU1677994 other upstream 212420 57149303 ~ 57150343 (+) True G1467031
TU1677991 other upstream 215022 57146513 ~ 57147741 (+) False G1467030
TU1677978 other upstream 243877 57117702 ~ 57118886 (+) True G1467020
TU1677617 other upstream 780042 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 1141817 56219242 ~ 56220946 (+) True G1466224
TU1678132 other downstream 115748 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 135333 57498382 ~ 57548178 (+) False LOC110494206
TU1678198 other downstream 226816 57589865 ~ 57614300 (+) True G1467219
TU1680364 other downstream 1144248 58507297 ~ 58507885 (+) True G1469076
TU1682011 other downstream 2738843 60101892 ~ 60104007 (+) False G1470607

Expression Profile