RNA id: TU1679762


Basic Information

Item Value
RNA id TU1679762
length 223
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1468516
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 58363099 ~ 58363321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTGCCCCTAATGGCCAGTTTTGAAGGCATTTCCCTATATCCTCAGGACATGAAGAGATGTCCAATTTTGAGCTCAATCTTGATTGATCTCTCTgaggaaaatgtgttttttgtgtgATTTCCATACAACAAGGAACACACTGTTTTATTTGTCACTGTCATGaatccccctctatctctcacaGTAAGTAACGTTATTATTTGCATGTCTAATTTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1679760 lncRNA upstream 2688 58360201 ~ 58360411 (+) True G1468514
TU1679732 lncRNA upstream 46733 58316143 ~ 58316366 (+) True G1468486
TU1679730 lncRNA upstream 50984 58311908 ~ 58312115 (+) True G1468484
TU1679727 lncRNA upstream 60156 58302617 ~ 58302943 (+) True G1468481
TU1679706 lncRNA upstream 103944 58259006 ~ 58259155 (+) True G1468460
TU1679764 lncRNA downstream 3290 58366611 ~ 58366894 (+) True G1468518
TU1679800 lncRNA downstream 55821 58419142 ~ 58419444 (+) True G1468552
TU1679801 lncRNA downstream 57854 58421175 ~ 58421409 (+) True G1468553
TU1679803 lncRNA downstream 59379 58422700 ~ 58422906 (+) True G1468555
TU1679841 lncRNA downstream 121341 58484662 ~ 58487082 (+) True G1468590
trnar-ucu-6 mRNA upstream 17435 58345575 ~ 58345664 (+) True trnar-ucu-6
XR_002469239.2 mRNA upstream 54079 58305759 ~ 58309020 (+) False LOC110494225
XR_002469240.2 mRNA upstream 54079 58305759 ~ 58309020 (+) True LOC110494225
XM_036950311.1 mRNA upstream 133818 58197116 ~ 58229281 (+) False LOC110494220
XM_021569144.2 mRNA downstream 333370 58696691 ~ 58707194 (+) True LOC110494235
LOC110494238 mRNA downstream 352751 58716072 ~ 58728214 (+) True LOC110494238
XM_036950321.1 mRNA downstream 469573 58832894 ~ 59011079 (+) False LOC110494239
XM_036950322.1 mRNA downstream 469573 58832894 ~ 59011079 (+) False LOC110494239
XM_036950323.1 mRNA downstream 469573 58832894 ~ 59011079 (+) False LOC110494239
TU1678198 other upstream 748799 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 814921 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 879510 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 1212756 57149303 ~ 57150343 (+) True G1467031
TU1677991 other upstream 1215358 57146513 ~ 57147741 (+) False G1467030
TU1680364 other downstream 143976 58507297 ~ 58507885 (+) True G1469076
TU1682011 other downstream 1738571 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 2609157 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 3192998 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 4335182 62698503 ~ 62698815 (+) True G1473171

Expression Profile