RNA id: TU1679842


Basic Information

Item Value
RNA id TU1679842
length 268
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1468591
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 58487284 ~ 58487551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatATAACTTAGCATGCATCGCCAAGTTAAGGTAAAAATCCTGCGCTGCACCAATGGGTTGGTTCTACAGAGCTGATTACCCGTTTTTCAAAGCACAAACGTATTTTGAACGACATTGTCACTAAAGTAAGCTGTTCTTGACCCAGTCGTATAGCAGACCAATTACCAACATGTAAATTGCAGATTAGAATATGGACACAAACAAATTAGCTACGTTCTACAAGTAGGTCTACTGTTTATCAATTTAGAAGTTCACTAAATAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1679841 lncRNA upstream 202 58484662 ~ 58487082 (+) True G1468590
TU1679803 lncRNA upstream 64378 58422700 ~ 58422906 (+) True G1468555
TU1679801 lncRNA upstream 65875 58421175 ~ 58421409 (+) True G1468553
TU1679800 lncRNA upstream 67840 58419142 ~ 58419444 (+) True G1468552
TU1679764 lncRNA upstream 120390 58366611 ~ 58366894 (+) True G1468518
TU1679843 lncRNA downstream 620 58488171 ~ 58488775 (+) True G1468592
TU1679844 lncRNA downstream 1834 58489385 ~ 58489646 (+) True G1468593
TU1679847 lncRNA downstream 5854 58493405 ~ 58493646 (+) True G1468596
TU1680375 lncRNA downstream 29749 58517300 ~ 58517499 (+) True G1469087
TU1680400 lncRNA downstream 46974 58534525 ~ 58534793 (+) True G1469111
trnar-ucu-6 mRNA upstream 141620 58345575 ~ 58345664 (+) True trnar-ucu-6
XR_002469239.2 mRNA upstream 178264 58305759 ~ 58309020 (+) False LOC110494225
XR_002469240.2 mRNA upstream 178264 58305759 ~ 58309020 (+) True LOC110494225
XM_036950311.1 mRNA upstream 258003 58197116 ~ 58229281 (+) False LOC110494220
XM_021569144.2 mRNA downstream 209140 58696691 ~ 58707194 (+) True LOC110494235
LOC110494238 mRNA downstream 228521 58716072 ~ 58728214 (+) True LOC110494238
XM_036950321.1 mRNA downstream 345343 58832894 ~ 59011079 (+) False LOC110494239
XM_036950322.1 mRNA downstream 345343 58832894 ~ 59011079 (+) False LOC110494239
XM_036950323.1 mRNA downstream 345343 58832894 ~ 59011079 (+) False LOC110494239
TU1678198 other upstream 872984 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 939106 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1003695 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 1336941 57149303 ~ 57150343 (+) True G1467031
TU1677991 other upstream 1339543 57146513 ~ 57147741 (+) False G1467030
TU1680364 other downstream 19746 58507297 ~ 58507885 (+) True G1469076
TU1682011 other downstream 1614341 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 2484927 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 3068768 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 4210952 62698503 ~ 62698815 (+) True G1473171

Expression Profile