RNA id: TU1680364


Basic Information

Item Value
RNA id TU1680364
length 589
RNA type TUCP
GC content 0.42
exon number 1
gene id G1469076
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 58507297 ~ 58507885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatatggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagcagaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggaatctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgaaccaaaacataaagcaaaatatacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1679847 lncRNA upstream 13651 58493405 ~ 58493646 (+) True G1468596
TU1679844 lncRNA upstream 17651 58489385 ~ 58489646 (+) True G1468593
TU1679843 lncRNA upstream 18522 58488171 ~ 58488775 (+) True G1468592
TU1679842 lncRNA upstream 19746 58487284 ~ 58487551 (+) True G1468591
TU1679841 lncRNA upstream 20215 58484662 ~ 58487082 (+) True G1468590
TU1680375 lncRNA downstream 9415 58517300 ~ 58517499 (+) True G1469087
TU1680400 lncRNA downstream 26640 58534525 ~ 58534793 (+) True G1469111
TU1680402 lncRNA downstream 28652 58536537 ~ 58536815 (+) True G1469113
TU1680515 lncRNA downstream 220462 58728347 ~ 58731402 (+) True G1469217
TU1680546 lncRNA downstream 249625 58757510 ~ 58839482 (+) True G1469237
trnar-ucu-6 mRNA upstream 161633 58345575 ~ 58345664 (+) True trnar-ucu-6
XR_002469239.2 mRNA upstream 198277 58305759 ~ 58309020 (+) False LOC110494225
XR_002469240.2 mRNA upstream 198277 58305759 ~ 58309020 (+) True LOC110494225
XR_005037024.1 mRNA upstream 257872 58197087 ~ 58249425 (+) False LOC110494220
XM_036950284.1 mRNA upstream 278016 58197082 ~ 58229281 (+) False LOC110494220
XM_021569144.2 mRNA downstream 188806 58696691 ~ 58707194 (+) True LOC110494235
LOC110494238 mRNA downstream 208187 58716072 ~ 58728214 (+) True LOC110494238
XM_036950321.1 mRNA downstream 325009 58832894 ~ 59011079 (+) False LOC110494239
XM_036950322.1 mRNA downstream 325009 58832894 ~ 59011079 (+) False LOC110494239
XM_036950323.1 mRNA downstream 325009 58832894 ~ 59011079 (+) False LOC110494239
TU1678198 other upstream 892997 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 959119 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1023708 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 1356954 57149303 ~ 57150343 (+) True G1467031
TU1677991 other upstream 1359556 57146513 ~ 57147741 (+) False G1467030
TU1682011 other downstream 1594007 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 2464593 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 3048434 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 4190618 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 4202454 62710339 ~ 62711136 (+) True G1473177

Expression Profile