RNA id: TU1680375


Basic Information

Item Value
RNA id TU1680375
length 200
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G1469087
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 58517300 ~ 58517499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATATATCCTGCAAAAAATGTTTGTAAAAACATATGCGCCTGTCTGATATAAGGAGCAATAAACGTGGAATACTTCAAAAAACCTTGAATATGAATGAAGGTTAACCTGATTGTGATTTATCGTATTAATCTTGAAATCAATAGCCTAAACCTTTTACATGCATGAgtctaataaataaaaaaacacgaCATAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1679847 lncRNA upstream 23654 58493405 ~ 58493646 (+) True G1468596
TU1679844 lncRNA upstream 27654 58489385 ~ 58489646 (+) True G1468593
TU1679843 lncRNA upstream 28525 58488171 ~ 58488775 (+) True G1468592
TU1679842 lncRNA upstream 29749 58487284 ~ 58487551 (+) True G1468591
TU1679841 lncRNA upstream 30218 58484662 ~ 58487082 (+) True G1468590
TU1680400 lncRNA downstream 17026 58534525 ~ 58534793 (+) True G1469111
TU1680402 lncRNA downstream 19038 58536537 ~ 58536815 (+) True G1469113
TU1680515 lncRNA downstream 210848 58728347 ~ 58731402 (+) True G1469217
TU1680546 lncRNA downstream 240011 58757510 ~ 58839482 (+) True G1469237
TU1680691 lncRNA downstream 415514 58933013 ~ 58933298 (+) True G1469374
trnar-ucu-6 mRNA upstream 171636 58345575 ~ 58345664 (+) True trnar-ucu-6
XR_002469239.2 mRNA upstream 208280 58305759 ~ 58309020 (+) False LOC110494225
XR_002469240.2 mRNA upstream 208280 58305759 ~ 58309020 (+) True LOC110494225
XM_036950311.1 mRNA upstream 288019 58197116 ~ 58229281 (+) False LOC110494220
XM_021569144.2 mRNA downstream 179192 58696691 ~ 58707194 (+) True LOC110494235
LOC110494238 mRNA downstream 198573 58716072 ~ 58728214 (+) True LOC110494238
XM_036950321.1 mRNA downstream 315395 58832894 ~ 59011079 (+) False LOC110494239
XM_036950322.1 mRNA downstream 315395 58832894 ~ 59011079 (+) False LOC110494239
XM_036950323.1 mRNA downstream 315395 58832894 ~ 59011079 (+) False LOC110494239
TU1680364 other upstream 9415 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 903000 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 969122 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1033711 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 1366957 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 1584393 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 2454979 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 3038820 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 4181004 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 4192840 62710339 ~ 62711136 (+) True G1473177

Expression Profile