RNA id: TU1680546



Basic Information


Item Value
RNA id TU1680546
length 440
lncRNA type read_through
GC content 0.40
exon number 2
gene id G1469237
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 58757510 ~ 58839482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacatttttcccattcctccttgcaaaacagcttgagctcagtgaggttggatggagagcatttgtgaacagcatttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggttcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagattccatcaggttttcttccagaatggtcctgtatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1680515 lncRNA upstream 26108 58728347 ~ 58731402 (+) True G1469217
TU1680402 lncRNA upstream 220695 58536537 ~ 58536815 (+) True G1469113
TU1680400 lncRNA upstream 222717 58534525 ~ 58534793 (+) True G1469111
TU1680375 lncRNA upstream 240011 58517300 ~ 58517499 (+) True G1469087
TU1679847 lncRNA upstream 263864 58493405 ~ 58493646 (+) True G1468596
TU1680691 lncRNA downstream 93531 58933013 ~ 58933298 (+) True G1469374
TU1680711 lncRNA downstream 202094 59041576 ~ 59041883 (+) True G1469394
TU1680722 lncRNA downstream 229792 59069274 ~ 59069515 (+) True G1469405
TU1680723 lncRNA downstream 230108 59069590 ~ 59069927 (+) True G1469406
TU1680724 lncRNA downstream 230447 59069929 ~ 59070138 (+) True G1469407
LOC110494238 mRNA upstream 29296 58716072 ~ 58728214 (+) True LOC110494238
XM_021569144.2 mRNA upstream 50316 58696691 ~ 58707194 (+) True LOC110494235
trnar-ucu-6 mRNA upstream 411846 58345575 ~ 58345664 (+) True trnar-ucu-6
XR_002469239.2 mRNA upstream 448490 58305759 ~ 58309020 (+) False LOC110494225
XM_021567415.2 mRNA downstream 371195 59210677 ~ 59245106 (+) False LOC100136832
XM_021567416.2 mRNA downstream 371195 59210677 ~ 59245106 (+) False LOC100136832
XM_021567417.2 mRNA downstream 371195 59210677 ~ 59245106 (+) False LOC100136832
XM_021567419.2 mRNA downstream 371195 59210677 ~ 59245106 (+) False LOC100136832
XM_021567420.2 mRNA downstream 371195 59210677 ~ 59245106 (+) False LOC100136832
TU1680364 other upstream 249625 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1143210 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1209332 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1273921 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 1607167 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 1262410 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 2132996 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2716837 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3859021 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3870857 62710339 ~ 62711136 (+) True G1473177

Expression Profile