RNA id: TU1681187



Basic Information


Item Value
RNA id TU1681187
length 285
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1469850
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59248265 ~ 59248549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cactcactcttgaATTAGATTTTCATTGCTACCATGATACCATGATCTACCTTTTTTTTCAAGTTTGAAGATAGCTGCTTGGTGGAGGCGATGGAAGACTTGCTGCCTGGTAGATGTAGATAGCTCTTCTCACTCCACAATGAGTGAATTACCTGTACAGTAGTTAAATCAGACATTCAATAAAAGTATCTGAACAACAGTATGTATCCAAACAGCACAGTAATTTTTGTATTTTCTATTCAATCGCTTTGGTTCTATTTTCACAATGTGGTGAATCTCCAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1681186 lncRNA upstream 654 59247141 ~ 59247611 (+) True G1469849
TU1681089 lncRNA upstream 130730 59117285 ~ 59117535 (+) True G1469761
TU1681077 lncRNA upstream 135506 59112540 ~ 59112759 (+) True G1469749
TU1680733 lncRNA upstream 161829 59086047 ~ 59086436 (+) True G1469415
TU1680728 lncRNA upstream 163826 59084225 ~ 59084439 (+) True G1469411
TU1681188 lncRNA downstream 656 59249205 ~ 59249504 (+) True G1469851
TU1681195 lncRNA downstream 9793 59258342 ~ 59258556 (+) False LOC110494244
TU1681198 lncRNA downstream 14602 59263151 ~ 59263383 (+) False LOC110494244
TU1681199 lncRNA downstream 15019 59263568 ~ 59263819 (+) False LOC110494244
TU1681200 lncRNA downstream 15641 59264190 ~ 59264529 (+) True LOC110494244
XM_021567418.2 mRNA upstream 3159 59210686 ~ 59245106 (+) False LOC100136832
XM_021569161.2 mRNA downstream 9930 59258479 ~ 59266492 (+) False LOC110494244
XM_036950330.1 mRNA downstream 34250 59282799 ~ 59438025 (+) False LOC110494246
XM_036950331.1 mRNA downstream 34250 59282799 ~ 59438025 (+) False LOC110494246
XM_036950332.1 mRNA downstream 34250 59282799 ~ 59438025 (+) False LOC110494246
XM_036950333.1 mRNA downstream 34250 59282799 ~ 59438025 (+) True LOC110494246
TU1680364 other upstream 740380 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1633965 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1700087 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1764676 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2097922 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 853343 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1723929 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2307770 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3449954 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3461790 62710339 ~ 62711136 (+) True G1473177

Expression Profile


TU1681187 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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TU1681187 Expression in each Bioproject

Bar chart with 6 bars.
TU1681187 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.