RNA id: TU1681188


Basic Information

Item Value
RNA id TU1681188
length 300
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1469851
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59249205 ~ 59249504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCATTAGTGATGGGAAACCGAGGCGTTCTGAATGCTTTGGAGCGTTCACCCAAATTGTGCTAAAAAACGGTTCATAACACAGGGCTTCATAATCTGTTCACAATGCGCTTTAGTGGAATTATCAGATATACTTTTTTTCCTCCATTGTTTTCATCAAAACTCTATTTCGTAGCGGTAAGTCGTTGGAGTCATTTGCATCTTACATCATGCTTCCCTTTTTTGCCTTCAAGTTGACTCTTTTTCAAAATGGAATCTTTGGCATTATTTAGGATGCTTAAGATAGACACATATACTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681187 lncRNA upstream 656 59248265 ~ 59248549 (+) True G1469850
TU1681186 lncRNA upstream 1594 59247141 ~ 59247611 (+) True G1469849
TU1681089 lncRNA upstream 131670 59117285 ~ 59117535 (+) True G1469761
TU1681077 lncRNA upstream 136446 59112540 ~ 59112759 (+) True G1469749
TU1680733 lncRNA upstream 162769 59086047 ~ 59086436 (+) True G1469415
TU1681195 lncRNA downstream 8838 59258342 ~ 59258556 (+) False LOC110494244
TU1681198 lncRNA downstream 13647 59263151 ~ 59263383 (+) False LOC110494244
TU1681199 lncRNA downstream 14064 59263568 ~ 59263819 (+) False LOC110494244
TU1681200 lncRNA downstream 14686 59264190 ~ 59264529 (+) True LOC110494244
TU1681211 lncRNA downstream 155670 59405174 ~ 59405793 (+) True G1469871
XM_021567418.2 mRNA upstream 4099 59210686 ~ 59245106 (+) False LOC100136832
XM_021569161.2 mRNA downstream 8975 59258479 ~ 59266492 (+) False LOC110494244
XM_036950330.1 mRNA downstream 33295 59282799 ~ 59438025 (+) False LOC110494246
XM_036950331.1 mRNA downstream 33295 59282799 ~ 59438025 (+) False LOC110494246
XM_036950332.1 mRNA downstream 33295 59282799 ~ 59438025 (+) False LOC110494246
XM_036950333.1 mRNA downstream 33295 59282799 ~ 59438025 (+) True LOC110494246
TU1680364 other upstream 741320 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1634905 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1701027 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1765616 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2098862 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 852388 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1722974 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2306815 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3448999 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3460835 62710339 ~ 62711136 (+) True G1473177

Expression Profile