RNA id: TU1681643


Basic Information

Item Value
RNA id TU1681643
length 300
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1470277
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59495827 ~ 59496126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATAAATCATCcatgccttgtcacaacacaactgattggctcaaacacattaagaaggaaagaaattccacaattaactttcaacaaggcacacctgttatttgaaatgcattccagttggctacctcatgaagctggttgagagaatgccaagtgtgtgcaaaactgtcatcaagtttactacatgattccatatgtgttatttcatagttttgatgtcctcactattattctacaatgtagaaaacagtaaaaataaagaaaaaccatggaatgagtaggtgtgtccaaacgtttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681336 lncRNA upstream 44645 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 90034 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 231298 59264190 ~ 59264529 (+) True LOC110494244
TU1681199 lncRNA upstream 232008 59263568 ~ 59263819 (+) False LOC110494244
TU1681198 lncRNA upstream 232444 59263151 ~ 59263383 (+) False LOC110494244
TU1681656 lncRNA downstream 9908 59506034 ~ 59506337 (+) True G1470290
TU1681667 lncRNA downstream 116730 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 117939 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 117939 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 143080 59639206 ~ 59639439 (+) True G1470331
XM_021569175.2 mRNA upstream 30494 59461314 ~ 59465333 (+) True LOC110494249
XM_036950330.1 mRNA upstream 57802 59282799 ~ 59438025 (+) False LOC110494246
XM_036950331.1 mRNA upstream 57802 59282799 ~ 59438025 (+) False LOC110494246
XM_036950332.1 mRNA upstream 57802 59282799 ~ 59438025 (+) False LOC110494246
XM_036950333.1 mRNA upstream 57802 59282799 ~ 59438025 (+) True LOC110494246
LOC118940562 mRNA downstream 21454 59517580 ~ 59517708 (+) True LOC118940562
XR_005037187.1 mRNA downstream 22712 59518838 ~ 59518979 (+) True LOC118940599
XR_005037198.1 mRNA downstream 23983 59520109 ~ 59520250 (+) True LOC118940610
XR_005037147.1 mRNA downstream 25259 59521385 ~ 59521526 (+) True LOC118940552
XR_005037209.1 mRNA downstream 26531 59522657 ~ 59522798 (+) True LOC118940621
TU1680364 other upstream 987942 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1881527 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1947649 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2012238 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2345484 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 605766 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1476352 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2060193 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3202377 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3214213 62710339 ~ 62711136 (+) True G1473177

Expression Profile