RNA id: TU1681929


Basic Information

Item Value
RNA id TU1681929
length 2334
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1470538
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59991004 ~ 59993399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaataaaaccacccacaTTTTAAATTCGGCCCACCAGTTGGTGAATCCTGCTGTATGGAAAATGAATGTTTATGAGCATTTCACACATCACTGACTGAACACACACTGGGCTACTGTTTATGAAACTATGGTCCATAATATCGGTCAGTCAACTATTGCAATTTCATGACAAGATGAACATACTAACATCACACAAATGTCTGGAACACAATTTTAGAGGCTAATTCTAAATTCCACAAGTCAATTTTCACTTAGTCATGCATTCATGTCAGTGGGAGACTTAGTGAAAAATCTATTTAGTGGAAGTTAGGATTCTCCCCTTACGCTCTATAGTCACACGCAGGGTCTATCTCGCTCTCTGACATACAGAAGCCTTCTCGTTTCCTGTGCTTATTGTGTACACGTATGCCACCAGCCCATCCTATAATCCCTGAGCACATCAGACAGCTTCTGCTCCTACTGTCATGGAGCTCTATACCAAGGGGATAGGCACTTAGATACTAAGCATGAAAAAGATTAACCTAAACCCCTTGTTGCCAGTAACTTATTTATTTTGCCGGAGATCTTTTATTAGTTGAGACTATACACAAGTTAAATTTCCCCCGCCTTGAGGTGTAATTATTTTGGGCAAAAACACCCTCTCGACGGATTGGAGACAAATTCCATAATAGTTTGTGGGAGGTTACACCCTGGGTTCACTGTTGAAGACAGACATATCCATCCTCTTGACAGAACACGAGGGGAAAGGTAACGTGACGCAGGGTTCAGTTACAGCAATAACAAAATGATGAATAGAGCATTGACATGTTAAAAAAAGATGAAACAAACAAGGTATTCCTCAacacaaaatgtgaagaaaaaaaaaagacatcACTCAATGACATTTCATAACAAATATTTCAGTGACGTGTCCTACAAAAGTGATATACTCCAAAAGACAGTATAGTTTTTTAAATGTTGGAAAGCACCCGAGAGTAGGACATGATCTTTAACCCGAGAGTAGGACATGATCTTCATATAGACGTCCCCTTATGGAGATTTGCATTCAAGAATATGTCGTAGGTTTACATTTTCTCTTATCATTTAGAATGTAATTGGTTTTCATTGAATTAGAACAAACCATTCTACCACTGTATTCACTACACACATTTTAGCTAAATGCAGGAACATTAATATTTGttttgaatataaaaatatattgcactactttttcCTCAACTTAGCCTGGGTAAATGATTTATAAATCTAATGAAAAGTTTGTTGATTACTACATAAAGTATAATCTAAAACCTAACCATTTCAAGTGTTATATTAGGACATTGTCATTGTTTGCATCAGTCATTTGATATCACTTTAAAAAGTGGGAGAGAAAAGCAGTATGATAAAAACCAGCAATAATATGAGCAGACACCAGCACACAGACAGTGGTCTTCATCAGTCTCCTCTAATATCCATGCAGTCAATAAGGGTTTCATACACATTGTCAGAATGCAGAAttcctataaaaaaaaaaaaaataatacatttttaaaaaggccaGACATTGAATATACTCAAACTTTGGCTCACTccatgacaaagggaaaacaataTCTCACGCTTATTCAGCCCTAAAAAGAGTTTCCCCATGGATTAACAGCTGCATGAAGAAGATAAATATGTAAGGAGAGATTTACACTGTAGACAGGGGAGAGTTGCAAATAGACAAAAACACACTACATTCAGTGATCGAGTGTGTGTATGTCACGGGGTGTGAGTATGTACATACGCAATGACAGTGCTTCCAAGCAGGGATCCATCAGAAAAGGGGCAAAAGGGGCGGGACGACTCGGTATGTTCAGTGATTATCATTGGCTGTGagcgagcatgtgtgtgtgtttggggggtagGGTGGGGGGTTTGTGTGGCTTTGACAGGATGTCAACTCCCAACATCCTTTCCTGGCTGCCACTGTATCCAAGGTCTGAGCATAGGTTGGAGACAGTACTTCTCACCCCACCCCTTCTATTATCAACTGGTGGGATTTCAGATTTCAAATCAGGTCCCTTTCAATCTCTCACATAATTGTACCAGTCCGGCCTCCTAATGTTCTTATTGGCTCCCTGCGCATCATCTGGGGGCGGGCTGAGGCTGTGGCGCCATGAGGACCCCTCCCTGGTGGGCCGCCCCCATCCCGGCCAGGACCGACATGGCCACTGCCTCAGCCGCGCATACGCTCAGCCCGTTGACGGTGATGGCACCAGGGCTGGGGACAGGGGCCGAAGGCCCGTGCTGGATGGCCAAGGCTGTGGAGCCCGTAGGCTCGGAGGGGGGATCCCtggagctctcctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681921 lncRNA upstream 10339 59980060 ~ 59980665 (+) True G1470533
TU1681819 lncRNA upstream 79544 59910408 ~ 59911460 (+) True G1470431
TU1681752 lncRNA upstream 272631 59716609 ~ 59718373 (+) True G1470383
TU1681710 lncRNA upstream 343008 59647740 ~ 59647996 (+) True G1470341
TU1681704 lncRNA upstream 347173 59643235 ~ 59643831 (+) True G1470335
TU1681941 lncRNA downstream 6663 60000062 ~ 60000432 (+) True G1470549
TU1681942 lncRNA downstream 7565 60000964 ~ 60001173 (+) True G1470550
TU1681925 lncRNA downstream 9255 60002654 ~ 60004610 (+) False G1470537
TU1681926 lncRNA downstream 9255 60002654 ~ 60004780 (+) True G1470537
TU1681943 lncRNA downstream 11752 60005151 ~ 60005493 (+) True G1470551
XM_021569177.2 mRNA upstream 103962 59857225 ~ 59887042 (+) False LOC110494251
XM_021569178.2 mRNA upstream 103962 59857225 ~ 59887042 (+) False LOC110494251
XM_021569179.2 mRNA upstream 129988 59857228 ~ 59861016 (+) True LOC110494251
XM_021569176.2 mRNA upstream 320897 59657801 ~ 59670107 (+) True LOC110494250
LOC118940557 mRNA upstream 368518 59622361 ~ 59622486 (+) True LOC118940557
XM_036950349.1 mRNA downstream 69851 60063250 ~ 60078437 (+) False LOC110494255
XM_036950350.1 mRNA downstream 69851 60063250 ~ 60078437 (+) True LOC110494255
XM_021569189.2 mRNA downstream 85351 60078750 ~ 60095370 (+) True LOC110494256
XM_021569193.2 mRNA downstream 251386 60244785 ~ 60247910 (+) False LOC110494259
XM_021569192.2 mRNA downstream 251518 60244917 ~ 60247910 (+) False LOC110494259
TU1680364 other upstream 1483119 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2376704 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2442826 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2507415 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2840661 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 108493 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 979079 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1562920 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 2705104 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 2716940 62710339 ~ 62711136 (+) True G1473177

Expression Profile