RNA id: TU1681950


Basic Information

Item Value
RNA id TU1681950
length 2921
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1470553
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60006148 ~ 60009096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatctatatatatatatatatatatatatagccatgggATGGAAAGGAATCTGTGCAGTGTTAAAGCCAATTGCCTGCTAGACTAATTCTGTATTGTgcaatgacttatgccatgttaacaTGAGATCCAAGTGAGAGTGATTAACAAAATCAGTGCCCTGCATGCCTGGTGGGTTTCGTCAGTGCtaatacaagtttagatagcctgctagactaatttaccaatctaaaaagtatttgctgacatggctaagAGTGACTGACAGGGGAAAACTGCTTATGCCCAACCAAATGTCTAAATTGTACCTTGTGTAATCACTATTCTAACTCTAAACAGTACATTGAGACACCTGAGTTCCtaaaatgttttacaaaataaaaatacaaataagtgACCTGTGAACGACAAATGCTCTCAAGTTTACTTTTAGCAATCAATGGACATGTACAGATCTCAAACATAATTGGATATGCATTCAAATATTCAAATCTAAGAGAAAATCTAAACATGAAATGTACGAGGAAAAATAACCATCTAATCCTGACGCAATCAGCCTACCGAAATCGCATACAGTGATCGACGTCATTAGCCCTCCACCCAAATGTTTCCAGAAAACTTGTTTTGGGACGGAGGCACCATTTCAATTTAACTTGAGGAAATACGTTCCTCAAACGCAAGGAACGTGTTTTCTGGACTcaaatgctagccagctagctaatattttGGAAAACAATGTTTGGCTAGTGTTAACCCGTTTGCAATCCCCTTAGCGTTGCTTGGTAGCTACAGCCATCAATTGTGTTGTCATACTTTACCTATTCCACCGTTCGTAGAACGCATACTAGCATTTTAATATAGCGCGGGAAAAGGGCATACGGACACCAGACATTTTACACGTAGATGCATGACGCGTTCGGAAATCCATGATTAGGACTATGATCAGACTATGATCAGAATACTGAAACAGAATTAACTGTTAAATCTAGACACGGCCTTATGAGAATTGAGTGTTCACTTGCTTCAGAATTCAGGCCTATTTTTTGCCATTTTAAATGAGCAAGTTGGAATACATCGAATTCCAGAGACCAGTTTCATGCTTGGGATACCATTGCACTAAATCTGCCATTACTACTCTGAAATACCATCTAGCCTACTCTACATGATACAACCAACCAAAATGCATGAAAGACTACCCGGGAGGCTGTTGCACAGATATGGTAATAGAACATGTTGAACTGAACAGATATCGGGGGTGGAAGGGTTTCTATTTGACTTTCAAGACATAAAATAAAAGTATATATAATCAATGCTGAACCTGCATTTGACCACATAGGTTGGGAAATACAATTGTAAAGATTAATACAATAGGTACAGCTTCTACGCAAgccacaacttttttttttttaactgctcTTCTTAAATGGCTATGTACAACACTGTAGAATTCATGAAAAGCCAGCCAGTTACATACACCATTAGTGTCTAGGATGTGAGTGTCTCAATAACTGAATGCCTAAACTAAGGGAAGACTACTCCCTCTATGAGCCTTTACCCATGACATACACAGCCAAACATTTAACCATCTATATGGAAGAAAGAGTAAATGAAGATAAAAAATATAACAATTCAGTTACATCAGTCTGACTATACAAACACTTCCCCAAATTTGCACTGCTCAAGTATTCATGCACTATTGTAAAGTTTTCAATGTTGTACTTATGCAAGGCTGTACCAAAATTTTCCGTCAACCATGAAAAGAAATGCATCGATTTTAATTCACATTTCCCCACTGGTTaaagctttttttttaaattccagaCTAAAAGCAGACATGTCGAAGACGGTTTCTTCACCTAAATGAATGTGCAGCTTGACTTGACAGGCTTCCCAACTCTCAGAACAACTCCTGAACCATGTGGCCATCTCTTGCTTCCAACCTTCATAAAAGCACATTTCCACACAGTTAATGAACAATACCCTACTAACCCCTCCCTCAATATAATTTTTTATAAGGAAGTAGTATCAACTCAGTTGTCATATCGGTGGATATCCACATCTTTTGCTTAGTTGCATATAAACTAGATTTGCTAACAGCTCaactgttgttttttattttgcAACTACTGGTATTTTTGAGATACAAGGCTTTACTTACCATACATTTGTCCCCCCTCTCTCAAACCCCACTTTCACATAAAAATAAAATTCATCGATTTAGCGGAGGGCCCATTCTTCAAGCTAACCAAGGTGAGGCCACATGTCAGCATCTCACTGTTCTTTCAAACAAGTCCTTCAGTTTGTTTTGTGACACTCATGTTCACCCCCACTTAAAATGATTACCGCTTTCAGTGTTTTCCCAAACAAAGGTCAGTGTGTCCGACTGAGCTCCAGGAGGGTCTTCTAGATTAAGAACGCACATGTTCTTTCATCCAataatatatattcatatatttctGTCTTAACATAGATCTGTTTGTTTTCCTTTTAGTCTATTGGTTGTGGTTTAAACTACTTCGGCGACCGGGGTGGAATGTTCTGTTCCTTCCCACTCCCTCTAGCCCAGCTGTGGGGGGAGATCCGTCGTCTCATAGAGGCACCACGCTGTTGATCCCGGTACTTTAGGCCCATCCCTCCGGATCGGGAAGGGCCGTTACCCGAACGGTATGTGCCCAGGGGGTCACGAAGGGACAGGCCTTCTCCAGACCCCTCAGGTTTCTCTGGCCTATCGCCATTGCTGCTGCTGGAGGCGGCAGGCTCGTCCGCCTTGTTGACCCGAAGCTCCTGCAGGGGTTGGCTGGCAGAGGTGATGGGAGGGTTGGGGGTGCTGGGGGCTGGGAGCTGGGTGGCTGGCCGCTTGCACATCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681943 lncRNA upstream 655 60005151 ~ 60005493 (+) True G1470551
TU1681926 lncRNA upstream 1368 60002654 ~ 60004780 (+) True G1470537
TU1681925 lncRNA upstream 1538 60002654 ~ 60004610 (+) False G1470537
TU1681942 lncRNA upstream 4975 60000964 ~ 60001173 (+) True G1470550
TU1681941 lncRNA upstream 5716 60000062 ~ 60000432 (+) True G1470549
TU1681951 lncRNA downstream 672 60009768 ~ 60010601 (+) True G1470554
TU1681952 lncRNA downstream 1990 60011086 ~ 60011323 (+) True G1470555
TU1681953 lncRNA downstream 3305 60012401 ~ 60012700 (+) True G1470556
TU1681957 lncRNA downstream 4134 60013230 ~ 60013448 (+) False G1470557
TU1681955 lncRNA downstream 4139 60013235 ~ 60013448 (+) False G1470557
XM_021569177.2 mRNA upstream 119106 59857225 ~ 59887042 (+) False LOC110494251
XM_021569178.2 mRNA upstream 119106 59857225 ~ 59887042 (+) False LOC110494251
XM_021569179.2 mRNA upstream 145132 59857228 ~ 59861016 (+) True LOC110494251
XM_021569176.2 mRNA upstream 336041 59657801 ~ 59670107 (+) True LOC110494250
LOC118940557 mRNA upstream 383662 59622361 ~ 59622486 (+) True LOC118940557
XM_036950349.1 mRNA downstream 54154 60063250 ~ 60078437 (+) False LOC110494255
XM_036950350.1 mRNA downstream 54154 60063250 ~ 60078437 (+) True LOC110494255
XM_021569189.2 mRNA downstream 69654 60078750 ~ 60095370 (+) True LOC110494256
XM_021569193.2 mRNA downstream 235689 60244785 ~ 60247910 (+) False LOC110494259
XM_021569192.2 mRNA downstream 235821 60244917 ~ 60247910 (+) False LOC110494259
TU1680364 other upstream 1498263 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2391848 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2457970 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2522559 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2855805 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 92796 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 963382 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1547223 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 2689407 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 2701243 62710339 ~ 62711136 (+) True G1473177

Expression Profile