RNA id: TU1681957


Basic Information

Item Value
RNA id TU1681957
length 219
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G1470557
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60013230 ~ 60013522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGTGGGGTCTCGAAATAAGGGGCAGGCGATGGGTTCCAGGTGGGGGGCAccagggggtagagagggtacTGCTGCTGGGGGCTGAACACCTGCTGCATATAGTGGTGTGTAGAGGTGTACTGGGACTGAGACTGGCCCTGCTGGCTGTACACACTGGAGTCCAGTACGCTACGGTAGCCATTCTTTGCAAAGAATGTGTTGATGGCCTTGATACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681953 lncRNA upstream 530 60012401 ~ 60012700 (+) True G1470556
TU1681952 lncRNA upstream 1907 60011086 ~ 60011323 (+) True G1470555
TU1681951 lncRNA upstream 2629 60009768 ~ 60010601 (+) True G1470554
TU1681948 lncRNA upstream 4134 60006148 ~ 60009096 (+) False G1470553
TU1681975 lncRNA downstream 25443 60038891 ~ 60039182 (+) True G1470575
TU1681986 lncRNA downstream 35765 60049213 ~ 60049467 (+) True G1470585
TU1681987 lncRNA downstream 36400 60049848 ~ 60050234 (+) True G1470586
TU1681996 lncRNA downstream 47122 60060570 ~ 60060770 (+) True G1470595
TU1682010 lncRNA downstream 88770 60102218 ~ 60103241 (+) False G1470607
XM_021569177.2 mRNA upstream 126188 59857225 ~ 59887042 (+) False LOC110494251
XM_021569178.2 mRNA upstream 126188 59857225 ~ 59887042 (+) False LOC110494251
XM_021569179.2 mRNA upstream 152214 59857228 ~ 59861016 (+) True LOC110494251
XM_021569176.2 mRNA upstream 343123 59657801 ~ 59670107 (+) True LOC110494250
LOC118940557 mRNA upstream 390744 59622361 ~ 59622486 (+) True LOC118940557
XM_036950349.1 mRNA downstream 49802 60063250 ~ 60078437 (+) False LOC110494255
XM_036950350.1 mRNA downstream 49802 60063250 ~ 60078437 (+) True LOC110494255
XM_021569189.2 mRNA downstream 65302 60078750 ~ 60095370 (+) True LOC110494256
XM_021569193.2 mRNA downstream 231337 60244785 ~ 60247910 (+) False LOC110494259
XM_021569192.2 mRNA downstream 231469 60244917 ~ 60247910 (+) False LOC110494259
TU1680364 other upstream 1505345 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2398930 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2465052 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2529641 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2862887 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 88444 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 959030 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1542871 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 2685055 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 2696891 62710339 ~ 62711136 (+) True G1473177