RNA id: TU1683428


Basic Information

Item Value
RNA id TU1683428
length 462
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G1471918
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61263288 ~ 61263749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTGTTGTTTCTcactcattaacatattttgaggctatatttgttgcaccagTGAGAGTCCTGTACCAATTTAAGTGATATTTAGTAGTAGTTTCCTCAGAATTAAATGTACATAGGGAACAGATCATTTTTCACTGTCGAGGATTTCAGAAAAAGTTAATCTCAAATTATGATTCAGCCATTTATGCATTTCAATGCATAGAGGATATTATAAAAACATTGATTTTCATCACATAATATTGGTGAGATAAGATTTAGAAAATCCAAACCTCTACCAATCTTGAAATGGGGATAATCTTTCACAAAAGTGTAGAGTACATCAGGGATGGTGAGGTTAGCTCTAACAGTAGCTACAATATCCTCGGGTCCTTGGTTCTCAAAGATGGACACATTCTGGGAAACAAGACTGACAAGAGAACTTGGTTAACCACACTTTTAACATTTAAATCTGATACAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1683427 lncRNA upstream 1835 61261247 ~ 61261453 (+) True G1471917
TU1683426 lncRNA upstream 2431 61260651 ~ 61260857 (+) True G1471916
TU1683425 lncRNA upstream 2729 61260093 ~ 61260559 (+) True G1471915
TU1683421 lncRNA upstream 13449 61248631 ~ 61249839 (+) True G1471911
TU1683376 lncRNA upstream 84323 61178649 ~ 61178965 (+) True G1471868
TU1683430 lncRNA downstream 4283 61268032 ~ 61268267 (+) True G1471920
TU1683431 lncRNA downstream 4534 61268283 ~ 61268494 (+) True G1471921
TU1683764 lncRNA downstream 24896 61288645 ~ 61288866 (+) True G1472211
TU1683768 lncRNA downstream 27120 61290869 ~ 61291131 (+) True G1472215
TU1683772 lncRNA downstream 30295 61294044 ~ 61294373 (+) True G1472219
XM_021569224.2 mRNA upstream 5920 61145511 ~ 61257368 (+) True LOC110494281
XR_005037030.1 mRNA upstream 103784 61154895 ~ 61159504 (+) True LOC118940484
XM_036950363.1 mRNA upstream 133921 61054631 ~ 61129367 (+) False LOC110494279
XM_036950364.1 mRNA upstream 133921 61054631 ~ 61129367 (+) True LOC110494279
XM_036950365.1 mRNA upstream 133922 61054631 ~ 61129366 (+) False LOC110494279
XM_021569226.2 mRNA downstream 6736 61270485 ~ 61276247 (+) True LOC110494282
XM_036950368.1 mRNA downstream 89736 61353485 ~ 61458471 (+) False LOC110493231
XM_036950369.1 mRNA downstream 89736 61353485 ~ 61458471 (+) False LOC110493231
XM_036950370.1 mRNA downstream 89736 61353485 ~ 61458471 (+) False LOC110493231
XM_036950371.1 mRNA downstream 89736 61353485 ~ 61458471 (+) False LOC110493231
TU1683229 other upstream 264225 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 1159281 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 2755403 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 3648988 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 3715110 57498382 ~ 57548178 (+) False LOC110494206
TU1684022 other downstream 292570 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 1434754 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 1446590 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 1953199 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 2394695 63658444 ~ 63663254 (+) True srsf3b

Expression Profile