RNA id: TU1683772


Basic Information

Item Value
RNA id TU1683772
length 330
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1472219
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61294044 ~ 61294373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taatagccccagatataaggtttacatctaattgttgtataagatgaatgagtgagtatgatactgtttacacaattttacaatgtgattttggactgtttaatgaaggaaaactcaaaaagggaattggatttgaactaaatcagaggaccgcccctgagcccagttagggtcagacatcctgggacatcCCTTTCctgccattccgaataaaacccaactttgagaaattatcaccataccatgtttttctccattaggaggggaacaaaggttgtagaccgagcttacctcaattacgagagggctaaaggtgtagaccattgctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1683768 lncRNA upstream 2913 61290869 ~ 61291131 (+) True G1472215
TU1683764 lncRNA upstream 5178 61288645 ~ 61288866 (+) True G1472211
TU1683431 lncRNA upstream 25550 61268283 ~ 61268494 (+) True G1471921
TU1683430 lncRNA upstream 25777 61268032 ~ 61268267 (+) True G1471920
TU1683428 lncRNA upstream 30295 61263288 ~ 61263749 (+) True G1471918
TU1683813 lncRNA downstream 29331 61323704 ~ 61323940 (+) True G1472260
TU1683815 lncRNA downstream 34444 61328817 ~ 61329672 (+) True G1472262
TU1683817 lncRNA downstream 35974 61330347 ~ 61331244 (+) True G1472264
TU1683822 lncRNA downstream 37711 61332084 ~ 61333232 (+) False G1472268
TU1683824 lncRNA downstream 37711 61332084 ~ 61333112 (+) False G1472268
XM_021569226.2 mRNA upstream 17797 61270485 ~ 61276247 (+) True LOC110494282
XM_021569224.2 mRNA upstream 36676 61145511 ~ 61257368 (+) True LOC110494281
XR_005037030.1 mRNA upstream 134540 61154895 ~ 61159504 (+) True LOC118940484
XM_036950363.1 mRNA upstream 164677 61054631 ~ 61129367 (+) False LOC110494279
XM_036950368.1 mRNA downstream 59112 61353485 ~ 61458471 (+) False LOC110493231
XM_036950369.1 mRNA downstream 59112 61353485 ~ 61458471 (+) False LOC110493231
XM_036950370.1 mRNA downstream 59112 61353485 ~ 61458471 (+) False LOC110493231
XM_036950371.1 mRNA downstream 59112 61353485 ~ 61458471 (+) False LOC110493231
XM_036950372.1 mRNA downstream 59112 61353485 ~ 61458471 (+) False LOC110493231
TU1683229 other upstream 294981 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 1190037 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 2786159 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 3679744 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 3745866 57498382 ~ 57548178 (+) False LOC110494206
TU1684022 other downstream 261946 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 1404130 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 1415966 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 1922575 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 2364071 63658444 ~ 63663254 (+) True srsf3b

Expression Profile