RNA id: TU1683850


Basic Information

Item Value
RNA id TU1683850
length 219
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1472294
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61352885 ~ 61353103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttatatggccCCTTCATTTATccgacggttctgacttggtgtacagggagaacactgtaagaatggcccatgttctgaattctgtcgctgtacatttcaaaagtgctgaagaAATCTCAATTGTCCGTAGAtaatttttttaaaggcagtaaaggAGGCTGAATTAGCTGTTTTGCTgtcagacaaggctctgctgatagccaggtgtacaGTAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1683837 lncRNA upstream 11450 61341132 ~ 61341435 (+) True G1472281
TU1683831 lncRNA upstream 14475 61338003 ~ 61338410 (+) True G1472275
TU1683827 lncRNA upstream 18390 61334167 ~ 61334495 (+) True G1472271
TU1683823 lncRNA upstream 19653 61332236 ~ 61333232 (+) True G1472268
TU1683824 lncRNA upstream 19773 61332084 ~ 61333112 (+) False G1472268
TU1683892 lncRNA downstream 103033 61456136 ~ 61457003 (+) True G1472329
TU1683854 lncRNA downstream 103937 61457040 ~ 61458235 (+) True LOC110493231
TU1684034 lncRNA downstream 162811 61515914 ~ 61516113 (+) True G1472465
TU1684037 lncRNA downstream 164989 61518092 ~ 61518375 (+) True G1472468
TU1684043 lncRNA downstream 173157 61526260 ~ 61526571 (+) True G1472474
XM_021569226.2 mRNA upstream 76638 61270485 ~ 61276247 (+) True LOC110494282
XM_021569224.2 mRNA upstream 95517 61145511 ~ 61257368 (+) True LOC110494281
XR_005037030.1 mRNA upstream 193381 61154895 ~ 61159504 (+) True LOC118940484
XM_036950363.1 mRNA upstream 223518 61054631 ~ 61129367 (+) False LOC110494279
XM_036950368.1 mRNA downstream 382 61353485 ~ 61458471 (+) False LOC110493231
XM_036950369.1 mRNA downstream 382 61353485 ~ 61458471 (+) False LOC110493231
XM_036950370.1 mRNA downstream 382 61353485 ~ 61458471 (+) False LOC110493231
XM_036950371.1 mRNA downstream 382 61353485 ~ 61458471 (+) False LOC110493231
XM_036950372.1 mRNA downstream 382 61353485 ~ 61458471 (+) False LOC110493231
TU1683229 other upstream 353822 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 1248878 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 2845000 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 3738585 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 3804707 57498382 ~ 57548178 (+) False LOC110494206
TU1684022 other downstream 203216 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 1345400 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 1357236 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 1863845 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 2305341 63658444 ~ 63663254 (+) True srsf3b

Expression Profile