RNA id: TU1684587


Basic Information

Item Value
RNA id TU1684587
length 1818
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1472961
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62356922 ~ 62359002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTAAATGTTACATTAACATTTTCAAAACATGAAAATACCATAGAAAAATAACATTGTACAAAACCATTTTTTGTTCTTATAAGTGAAAACATATACAAAGCTTATAATCGGGCCATTTCTATTAGTGCTTCACACACTCACAGTGCCTTACATTTATAATACAGTATCATATTTCAAAGAAAAGAAAAACATCCCAAAGCCTATGTTATTATGGCTAAAAAACGTGATCAATGTAAACCTGTAACAGACACATTAATGGctgaacttcctgatttggcTTCTTTTTCGGCTTGGTCATTAAGAAATGCAGCGGCCATGACTGAAGCCAAACAAGAGTTGTCTTGTAAGGTGGTTTAATGtgggtgtctcgtgtgtgtgttcgtatgtGGCAAGCGTTTGTACATTCACTCTACCAAAACAGTACAAAGTTACATTAACTAACCCTTCTAGATATCTTGAAACCAGGTCTTGTGTCTTAAAGTTGCCATAGGTATcgaatgtcaaatcaaattgacTACGGGCATTACAACCTCCAAATTGATGACTGCTTGGTGGGCAGGATTGAAATAAACCCAACCCCAGGAAAACTATTACGGTACCGTTTATTCTGTGACATAAAATGTTTTCCTATCATCTCGCAAATCTCTGTTCTgaacgagactgactttatgattTACACTTTGTGTTGACACTAGAatgaatgtttctgactcattGATGCCACATAGGCCATTTTTAAACAAGAAGTCGCTTTTTAGTGTCAGTTGCTCTTTAAAATACAAAAATGGCACACAGAGATATGTCTTAAATATTTTTGATATTTGGATGGCTCTGGATTGGTTTCTCCCCTCTCCTGGTCCTTCATTGAATTCAATGGACATGGAAAAGCTACAGAGGCAGCTATCCCCTTCAGGTTTCATGAAGGAGGTCCACTTCCCTACGTGCTCACAGCGTTAGGCTTCAGGAACAACCTGCTCTGCCAGTAGTCTGGATTGTCAAATGAGCGATCTCCGCCACCAGGCTCCCCCACCCCTACCCCTGCACGCACTTTTACAAATGCCCCCATCCCTGTGTGCTGACCCCCCATGCCCCCCACTacaccctcaccttctccctgcaAATTCTCATACTCCACTGGGTCCCCAGCTCCAGGGGCAGCCAGGGAATCCATGTCCTCGTACtcatccacctctccctctcctcctctctgcatcCTCAGCCCCTCCCTGCTTCGCAGAGCCTGCCGCAGCTTGGGTTGCCTGTTAGTGTAATGATAGTCGTCCTCTTCTACGTATTCAtcgtcctcttcctccacctctctctcgtctctcatcCGCTGTTTGTGCATAGCTCCAGGATGAGGGACAACTCGTGTTGGGGGATCGTCTGGTCTTTCACTGGCCTCTGGTCCAACACTTCGAATGTCCATGTACTCATATTCAACGTCACCAGAGCCCCTTTCCTCCATTTTATCTGAATCAGAGTTGAGGGCAGGGAATTCATAGTCCTGGTGTTCTTCATGCTTGGTTTGGCCTCCCCTGTTCTCCCCAGCTGATGTCCTGTGCCCCGTGCACTCTGTATACTCTGTGTCCAGGGATGGCAGAGAAGAGCGTTGCCTCTTGTTCATCTTCAACCAATGGCCATCTTTGGAGTGGCCAGGCTGCTGCCTGGGGGAGAGAGTCATCATGAACGCCTGTTTGTTCATGTACTCATATTCTTCACAGGAACTGTCATTGTCCTCCGAGGGTCCTGACGGGTATGAGGGAACCTTGGACGTCCTCCCGTGAGGAAGGGTGACCCGTGAGCTAGACAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1684530 lncRNA upstream 73522 62282838 ~ 62283400 (+) True LOC110494308
TU1684491 lncRNA upstream 141350 62214323 ~ 62215572 (+) True G1472883
TU1684356 lncRNA upstream 244194 62111611 ~ 62112728 (+) False G1472762
TU1684592 lncRNA downstream 8841 62367843 ~ 62369994 (+) False G1472966
TU1684593 lncRNA downstream 8841 62367843 ~ 62370614 (+) True G1472966
TU1684701 lncRNA downstream 192798 62551800 ~ 62552243 (+) True G1473067
TU1684718 lncRNA downstream 206747 62565749 ~ 62566066 (+) True G1473082
TU1684719 lncRNA downstream 207092 62566094 ~ 62566299 (+) True G1473083
XM_021569263.2 mRNA upstream 70084 62282855 ~ 62286838 (+) False LOC110494308
XM_021567409.2 mRNA upstream 102112 62251544 ~ 62254810 (+) True ghrl
NM_001124588.2 mRNA upstream 102113 62251539 ~ 62254809 (+) False ghrl
XM_021567407.2 mRNA upstream 102123 62210022 ~ 62254799 (+) False ghrl
XM_021569273.2 mRNA downstream 46411 62405413 ~ 62417692 (+) True LOC110494317
LOC110493234 mRNA downstream 67542 62426544 ~ 62433065 (+) True LOC110493234
XM_021569271.2 mRNA downstream 112929 62471931 ~ 62491150 (+) True LOC110494314
XM_021569274.2 mRNA downstream 132969 62491971 ~ 62496531 (+) True LOC110494318
XM_021567414.2 mRNA downstream 147854 62506856 ~ 62528639 (+) False LOC100136666
TU1684022 other upstream 799884 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1357859 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2252915 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 3849037 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 4742622 57589865 ~ 57614300 (+) True G1467219
TU1684810 other downstream 339501 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 351337 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 857946 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 1299442 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 1325088 63684090 ~ 63688090 (+) True tmcc2

Expression Profile