RNA id: TU1684791


Basic Information

Item Value
RNA id TU1684791
length 232
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1473153
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62660980 ~ 62661211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcaccgtatatcACTGAGTTGGATAACACAAACTGCTCCATCTGTCAAATAGAAAACGTTCATGGGTATTGGAGGAGCTTGaagtttgttttgtattttgttttttgGGGGTTGGTTACAACTTCAGAAGCCAGATCAGAGACCCCCTGATCAAAGGGGACACCCGGGTTAGTTTTGGAATACATGGGGAGTAACACTCAACTCTTTGATACTCCACATCAATATTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1684789 lncRNA upstream 1193 62659518 ~ 62659787 (+) True G1473151
TU1684781 lncRNA upstream 10107 62650610 ~ 62650873 (+) True G1473143
TU1684772 lncRNA upstream 31863 62625405 ~ 62629117 (+) True G1473134
TU1684758 lncRNA upstream 49137 62611137 ~ 62611843 (+) True G1473120
TU1684721 lncRNA upstream 92522 62568220 ~ 62568458 (+) True G1473085
TU1684759 lncRNA downstream 2763 62663974 ~ 62667680 (+) True G1473121
TU1684807 lncRNA downstream 39766 62700977 ~ 62701275 (+) True G1473168
TU1684813 lncRNA downstream 43590 62704801 ~ 62705045 (+) True G1473174
TU1685571 lncRNA downstream 61187 62722398 ~ 62722636 (+) True G1473853
TU1685578 lncRNA downstream 65331 62726542 ~ 62727202 (+) True G1473860
XM_036950398.1 mRNA upstream 11455 62575985 ~ 62649525 (+) False LOC110494319
XM_036950399.1 mRNA upstream 11455 62575985 ~ 62649525 (+) False LOC110494319
XM_036950397.1 mRNA upstream 11455 62575986 ~ 62649525 (+) True LOC110494319
XM_021567414.2 mRNA upstream 132341 62506856 ~ 62528639 (+) False LOC100136666
XM_036948428.1 mRNA downstream 86560 62747771 ~ 62760165 (+) False LOC110493236
XM_036950406.1 mRNA downstream 102271 62763482 ~ 62774441 (+) False c1galt1b
XM_021569277.2 mRNA downstream 102274 62763485 ~ 62774441 (+) False c1galt1b
XM_021569279.2 mRNA downstream 102274 62763485 ~ 62774441 (+) False c1galt1b
XM_036950404.1 mRNA downstream 102274 62763485 ~ 62774441 (+) False c1galt1b
TU1684022 other upstream 1103942 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1661917 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2556973 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 4153095 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 5046680 57589865 ~ 57614300 (+) True G1467219
TU1684810 other downstream 37292 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 49128 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 555737 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 997233 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 1022879 63684090 ~ 63688090 (+) True tmcc2

Expression Profile