RNA id: TU1685620


Basic Information

Item Value
RNA id TU1685620
length 461
lncRNA type intronic
GC content 0.50
exon number 1
gene id G1473901
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62756010 ~ 62756470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcaccaccagtacagagcttgctcaggaatggcagcaggcaggtgtgagtgcatctgcacgcacagtgaggcaaaaactttttgaggatggcctggtgtcaagaagggtagcaaagaagccacttctctccaggaaaaacatcagggacagactgatattctgcaaaaggaacagggattggactgctgaggactggggtaaagtcattttctctgataaatcccctttccgattgtttggggcatccggaaaaaagcttgtctggagaagacaaggtgagcgctaccatcagtcctgtgtcatgccaacagtaaagcatcctgagaccattcatgtgtggggttgcttctaagccaagggagtgggctcactcacaacacatcttccgagagcaacttctcccaaccacccaggaacagtttggtgacgaacaatgccttttctagcatgatggagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685618 lncRNA upstream 1033 62754754 ~ 62754977 (+) True LOC110493236
TU1685604 lncRNA upstream 11447 62744257 ~ 62744563 (+) True G1473885
TU1685581 lncRNA upstream 27372 62728308 ~ 62728638 (+) True G1473863
TU1685578 lncRNA upstream 28808 62726542 ~ 62727202 (+) True G1473860
TU1685571 lncRNA upstream 33374 62722398 ~ 62722636 (+) True G1473853
TU1685642 lncRNA downstream 5313 62761783 ~ 62762223 (+) True G1473920
TU1685644 lncRNA downstream 6339 62762809 ~ 62763078 (+) True G1473921
TU1685650 lncRNA downstream 14077 62770547 ~ 62770913 (+) True G1473927
TU1685646 lncRNA downstream 18269 62774739 ~ 62777246 (+) True G1473923
TU1685647 lncRNA downstream 21426 62777896 ~ 62778280 (+) True G1473924
XM_036950398.1 mRNA upstream 106485 62575985 ~ 62649525 (+) False LOC110494319
XM_036950399.1 mRNA upstream 106485 62575985 ~ 62649525 (+) False LOC110494319
XM_036950397.1 mRNA upstream 106485 62575986 ~ 62649525 (+) True LOC110494319
XM_021567414.2 mRNA upstream 227371 62506856 ~ 62528639 (+) False LOC100136666
XM_036950406.1 mRNA downstream 7012 62763482 ~ 62774441 (+) False c1galt1b
XM_021569277.2 mRNA downstream 7015 62763485 ~ 62774441 (+) False c1galt1b
XM_021569279.2 mRNA downstream 7015 62763485 ~ 62774441 (+) False c1galt1b
XM_036950404.1 mRNA downstream 7015 62763485 ~ 62774441 (+) False c1galt1b
XM_036950402.1 mRNA downstream 7405 62763875 ~ 62774441 (+) False c1galt1b
TU1684816 other upstream 44874 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 57195 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1198972 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1756947 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2652003 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 460478 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 901974 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 927620 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1806904 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1851784 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile