RNA id: TU1685646


Basic Information

Item Value
RNA id TU1685646
length 2508
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1473923
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62774739 ~ 62777246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATAATGTCACCATTCATTGGGGCGGAGGGTAGCTTAGTGGTTTAAGttttgagccagtaaccgaaaggtcaaatctgtcattctgcccctgaaaaaggcagttaacctactgttccccggtaggctgtcattataaataagaatttgttcttaactgaagaTCACATGGATCAGAGTTAAGTCTGCCTCAAACACCTGCCTTTTACCAAGCCTCTGGATTTCTCTTtctggggggtgtgtgtgttggtacaaGCAACCCAATCCTACAATCTGCTATATAGTTCACATTCCTGTAAAAGGGAACTGTGTGTATAGAACTGTATCTGTTTATGTTGGCAGTGACCATATGGTTATTTGTGTTATAACCATATTTTGCAGTATGTTCTCAAAGGCATAATTTTACTCAGCTGTGTTTCTCTAATCTCATCAGAGAGGCTGATTTTATTGACTGTGTGTGAAATTATATCTCAGACAGAGGTGCTCTAGGGGTTACCAAAGCCTGGTACGGTATATGACCCTTAATCTGGTATAATTTAGCCATGGTTGTAATACATTAGGTAACATATTGTAAAATACAGAAGTAACATTACATTAGTTTGCAATATGTTACATGTATGTTTACAGAATCATTCTCTCGTGGTGGTGAGAAATAAGCAGTGGCATCACGGCAAGACTACGGTTTCTTAGTAAATCCTATTTAGAGGAACTCTGGGTGAATGATGTGAATACAGTCCGGTGTAGTAGACGAAGCAGGACCCTACACACCGGGTGCAAATCTAAGCAGAGAGATGGTATGGAGAACAAAACTGTGGTCAGATCTAGTAAGATGACAGAGCAGCACTAAGCAGTAGCACAACATTTCAGCCAGCACAGGGCTGATAACTGGTACAATCTTGGAGGCTTTCTGTTAGAGAATTAATTTATGAATATTCAATTCACTCCATATTAGACCATAATGGTCTCTAACATGTATGGGTCTCAATCACTAAGATGACTTAAGTGTTGTTTTTGTAATGTTTGGTGTGGTCATTTCATGTAAAAGTCCTACGTGCCTCAGTCTCCCGTTCTTGATGAGAATTCCTCCTCTTGGCTGTGGGTATTCCTCTCCCCAGGGCTGAGGAATGGCTATCACCACGCACAGATCAACAAGATAAACAGGCTTAGTTATGAAACACGTTCCCCAGCGTTCAATAGTCATCTACTTTGGCATTTGGGAATTCCACAAAGTGTCACTGGAGGGCAAACGGTCTCCAGGTTCTGCTTTCCGTCTCTTCCCAGCAACTGCTCTGTGTAGTGTACAGtagctacccactgggcacagacatcagttaaaggtctatttttgatttacatttggtagTCAACTAAcctgaattcaatgtgaaatcaacagaaCAAttcatgtcattggatttagttgggtgaaaaaatattttccttacgttgatgactttaaaaaatccaatcagttttctacCTTGATTCAATTAcattaaatgtttttgttgtttataTGTAAAACTGGGTAAATCAGTGTTTTGCCCAGGGGGTAGTTACTCACCTGACCTGGAGCTCCTGCGACCCAGGAGGCCGAGAAAGACGCCATCCATGTCTGCTACAGAAAAAGAGTTTGGTTCTTTAAAAACATAattgcatacagtggggcaaaaaggtatctagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacggacaaaagtagaaaaatccagaaaatcacgtaggatttttaatgaatttatttgcaaattatgccttttaagtgggagaacttgcacaattggtggccgactaaatacttttttgccccactgtatgtaacatTTTCACCAAAAGGCGTTGCATAAAATTGTACTGTTTGTGGAGGTAGAGCATTTACACCTAGAAATAAGATGATCACATATTACAGTATGTATGTTACCACTGCATAATGCAATATATTAATTCATCTTCAGACGTTTTAGTCACAGACTTGCTGCATTAGATAAACCTACTGTCTAACGcacaaataaaatgtttaaaagtTGATAACATTTCTAGATGGTGGGCACACGGTCATCCATATCATGTATACTGTGGAAGAACCTGCTACCGGTGACAGAATACAAAGGCTCTCTTTGGACCCTGGAGTCCCAGACTCTTACCTGCAGTTCTCCTGCCCATCAGACCCACAAAGGTGTCGTAGTCGCTGTACCTCTTGGAATGAGTTAAATCACCGCTGAGGTAGTCTTGTCTGAACTGGGAGAGCAGATTGTTTATCATTAAATAACTCAAATGATTTAGAATTATTTTGTGAGATTAATATACAGACCAACTACTACATGAACCAGTTCAACTGTGAAGAAAGGGCAAAACCTCAGACTTATCCATAgaaatgtaatatatatacttaacacaaatataaatgcaatatgtaaagtgttggtttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685650 lncRNA upstream 3826 62770547 ~ 62770913 (+) True G1473927
TU1685644 lncRNA upstream 11661 62762809 ~ 62763078 (+) True G1473921
TU1685642 lncRNA upstream 12516 62761783 ~ 62762223 (+) True G1473920
TU1685620 lncRNA upstream 18269 62756010 ~ 62756470 (+) True G1473901
TU1685618 lncRNA upstream 19762 62754754 ~ 62754977 (+) True LOC110493236
TU1685647 lncRNA downstream 650 62777896 ~ 62778280 (+) True G1473924
TU1685651 lncRNA downstream 1606 62778852 ~ 62779087 (+) True G1473928
TU1685652 lncRNA downstream 1882 62779128 ~ 62779440 (+) True G1473929
TU1685654 lncRNA downstream 3033 62780279 ~ 62780618 (+) True G1473931
TU1685656 lncRNA downstream 4309 62781555 ~ 62781860 (+) True G1473933
XM_036950406.1 mRNA upstream 298 62763482 ~ 62774441 (+) False c1galt1b
XM_021569277.2 mRNA upstream 298 62763485 ~ 62774441 (+) False c1galt1b
XM_021569279.2 mRNA upstream 298 62763485 ~ 62774441 (+) False c1galt1b
XM_036950404.1 mRNA upstream 298 62763485 ~ 62774441 (+) False c1galt1b
XM_036950402.1 mRNA upstream 298 62763875 ~ 62774441 (+) False c1galt1b
XM_021569280.2 mRNA downstream 30411 62807657 ~ 62812224 (+) True LOC110494322
XM_036950408.1 mRNA downstream 49322 62826568 ~ 62838789 (+) False stat2
XM_021569284.2 mRNA downstream 50307 62827553 ~ 62839920 (+) False stat2
XM_021569283.2 mRNA downstream 50308 62827554 ~ 62839920 (+) False stat2
XM_036950409.1 mRNA downstream 50308 62827554 ~ 62839920 (+) False stat2
TU1684816 other upstream 63603 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 75924 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1217701 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1775676 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2670732 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 439702 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 881198 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 906844 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1786128 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1831008 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile