RNA id: TU1685656



Basic Information


Item Value
RNA id TU1685656
length 306
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1473933
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62781555 ~ 62781860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctgtaAGGATCGATGCTGGCAGAGACGAAAAGCTTGTACAGAGAGTGAACATTGAATTATCAACGGACATGGAACGGAACAGGATAGGACAGTGTCTGGAAATTAACACATAATGACATTAATGCAGACACCGGGAACAAACGGGGAAGCAGACAGTTATAGACGGGGCAATCAACTAagggaaggagtccaggtgagtccaatgagcgctgctgtgcgtaatgatggtgacaggtgtgcgtaatgaagggcagcgggagcaggcgtgacaattGCTagggtttcttggcccaagcaagtctctt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1685654 lncRNA upstream 937 62780279 ~ 62780618 (+) True G1473931
TU1685652 lncRNA upstream 2115 62779128 ~ 62779440 (+) True G1473929
TU1685651 lncRNA upstream 2468 62778852 ~ 62779087 (+) True G1473928
TU1685647 lncRNA upstream 3275 62777896 ~ 62778280 (+) True G1473924
TU1685646 lncRNA upstream 4309 62774739 ~ 62777246 (+) True G1473923
TU1685657 lncRNA downstream 982 62782842 ~ 62783047 (+) True G1473934
TU1685658 lncRNA downstream 1738 62783598 ~ 62783926 (+) True G1473935
TU1685660 lncRNA downstream 9332 62791192 ~ 62791408 (+) True G1473937
TU1685668 lncRNA downstream 22934 62804794 ~ 62805016 (+) True G1473945
TU1685670 lncRNA downstream 32722 62814582 ~ 62814908 (+) True G1473947
XM_021569279.2 mRNA upstream 7114 62763485 ~ 62774441 (+) False c1galt1b
XM_021569280.2 mRNA downstream 25797 62807657 ~ 62812224 (+) True LOC110494322
XM_036950408.1 mRNA downstream 44708 62826568 ~ 62838789 (+) False stat2
XM_021569284.2 mRNA downstream 45693 62827553 ~ 62839920 (+) False stat2
XM_021569283.2 mRNA downstream 45694 62827554 ~ 62839920 (+) False stat2
XM_036950409.1 mRNA downstream 45694 62827554 ~ 62839920 (+) False stat2
TU1684816 other upstream 70419 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 82740 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1224517 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1782492 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2677548 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 435088 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 876584 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 902230 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1781514 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1826394 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile