RNA id: TU1685660


Basic Information

Item Value
RNA id TU1685660
length 217
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1473937
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62791192 ~ 62791408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacagcagagggaacacccccctatccacatcgatggaacagtagtggagagggtagtacgttttaagttcctcggcgtacacatcacagacaaactgaattggtccacccacacagacagcatcgtgaagaaggcgcagcagcgcctcttcaacctcaggagggtgaagaaatttggcttgtcaccaaaagcactcacaaacttctacagatgca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685658 lncRNA upstream 7266 62783598 ~ 62783926 (+) True G1473935
TU1685657 lncRNA upstream 8145 62782842 ~ 62783047 (+) True G1473934
TU1685656 lncRNA upstream 9332 62781555 ~ 62781860 (+) True G1473933
TU1685654 lncRNA upstream 10574 62780279 ~ 62780618 (+) True G1473931
TU1685652 lncRNA upstream 11752 62779128 ~ 62779440 (+) True G1473929
TU1685668 lncRNA downstream 13386 62804794 ~ 62805016 (+) True G1473945
TU1685670 lncRNA downstream 23174 62814582 ~ 62814908 (+) True G1473947
TU1685671 lncRNA downstream 23593 62815001 ~ 62815288 (+) True G1473948
TU1685673 lncRNA downstream 29607 62821015 ~ 62821230 (+) True G1473950
TU1685676 lncRNA downstream 31148 62822556 ~ 62822770 (+) True G1473953
XM_021569279.2 mRNA upstream 16751 62763485 ~ 62774441 (+) False c1galt1b
XM_021569280.2 mRNA downstream 16249 62807657 ~ 62812224 (+) True LOC110494322
XM_036950408.1 mRNA downstream 35160 62826568 ~ 62838789 (+) False stat2
XM_021569284.2 mRNA downstream 36145 62827553 ~ 62839920 (+) False stat2
XM_021569283.2 mRNA downstream 36146 62827554 ~ 62839920 (+) False stat2
XM_036950409.1 mRNA downstream 36146 62827554 ~ 62839920 (+) False stat2
TU1684816 other upstream 80056 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 92377 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1234154 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1792129 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2687185 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 425540 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 867036 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 892682 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1771966 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1816846 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile