RNA id: TU1686456


Basic Information

Item Value
RNA id TU1686456
length 3019
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G1474632
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63484375 ~ 63489600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAACATTTGTTTTCCCACGAAAGAGAACATTTATTGATACCGAAACAAAATCTATGAAGTGCAAGCTGCACTTTGTGTTTTTTGACAACTACGTCTTAGGCGCATGTGCAATTGCGGTTTccattttttctccaaaaatcAGGTGGACACAGCACAAAGCATATTTTCCATTTAAAACACGGGAAATGGCATCACAAAGCATTAACACAACGAGCAGTAAATTCTGAGGAAATGCACAAAGGGCCACTGTGCAAAGGACCCTTGCCCCTGTGCATTCTGGAGTATTTTTGCGTATGGTGTTTTCCAGTGTCCAACggtggtatggtggtgttatCCACTCTGGTATTCCTTGCTCAAATCTGAAGTGTCCATAACATACATACAGTAATAATTTTATACAAGAAATTTcacttaaaatacatttttaaataaaatgtctttttttttatatGTAAAAATGCCAATACACTTTGAATTCTAAGTAGAAGCAGAAGGCTATGGCATTAACAACACTACTGGTGAGTTCCCCAAGTATAAAGTTGGCAATTAATGTAAAGgccaaactgaaaatgaacaaTTATGTAAATTAACTTCCACTGTAGTATTTGGAGAGATTTTGATACATATGCTTAATGCCAGTCAACAAACCTTATCCTTAGTTTAACCCTAAACAGAATTTAAGTACACTGTTGAACTAAACCAATTGTTAAAATCTATATATGTTTTAGGGACATACATACTCTTGGTCCTTGAGAGCAAATAGAAAGGTATCCTGTTTCAAAAGTGAGTCATACATTTGACATAACTGATTGAACTCATTGGAGAAATTCCATTTAGATAAACTACTTTCCTTCTCACCTTGTTGACGCACGTTTGTGGAACTGAAAAGACTATGTGAAATGGCTCCACCTAGCTTTCTGGAAGGCTAGGCAGTCTCTAAATGGTTTCCAGACAGTTCTCTCAGAACCAAAAGGGGAAGTCATCAAGGGACACATATTACTGCCATGAGGGGCCATCGTCATTTGGTTTAGAAGCTTTATTTCCTTCTTTACTATGTATAGTAAAATACTAACTTAAACTTAACTCAACCATTTAACTGTGGGGATGATTGTTGGAAATAACATTACTCATAATATAAAAAACAGGATAACGTCCTGACCTCAAGGACCTCAGTGGCACAGGAAAATAGTGGTAGTTCTTATTTAGTCAAAAAATAATACCCTCTATGGAATTTGTGTGGCATCACCTCTATTGAATGAACCCAAGGATCATATACCTGTTGACAATCAAAACCATTCTGGATTTACGCTAatagagtcaatatttgcatatTGCCTAACTAATAGGCACTTTTAAATTAGACCACTCAAAATAAACTTATGAGCcttgtttttgtgttttttttactattagtCTATATAGTCAACAGGGCAATGCAACACTTGTAAAACAAACTCTGATATCCTAGATTCTCTTATAATGTATCAAACAAAATATTGTTTCCAAAATTGAAAATTCACACTTAACTGTGAGTGCTATTGGTGCCAAGCAAAGATACACTGACAACAGTCGGCGATACAGTAGGTGAAAATGTGAGCACTTTGGCGATTAGAAATAACAAAAATCGTCCCAACTATGGATCAAATAAGTAAGACCTTATCAAACAGCAATGTTTGATTTGAAAATATTCCAGGTAGAGTTTTATGTAAATAACTGAATTTCAAAACCTTTTACATTGGCTGCTTGATAGAGACTGGTATATTCTTATTGATCAACAAAAGCAGATGCCAATTTTACTAAGAAATTATTGATAATGCAATGGAAAACTGTATCGTCTTACAACTACACACCTTCACAGGCCTCTTAAAATATGGCATGGCTTATCTATTACCAGTCTGACTAAGTGTAAGAAATTCAAATGAGGAGATAACTAAGGGTAGTTAAGATTTTTTTTCAGGTCTCAGATTAATCTTTACATGCTTTTATGTTCTACTGCAATGAATAGCAAACAAGACTGACACCAGATAAATGATTGTTTGCAAATACAATGGATGTCagattttttcaaaataaaaaaggCAATAACCAATGTAGTTGTGATTCACAAAAATGCATAAATTACACTACAGATGAATGATTTACAGATTAGTTGCAGAAATAGAGAAAGGTGAGTCTACTTTGACTTAACCAATTTCAATTAAATGTATCCACTTCTTGTGATTTAAATTGTTCACATTAAAAGTAGACCACCAATAGAATGTAATGCAGGCTACATGCTAATGCATGCTATGCTGAGTTGACAacttaaaatatctgaaaggctTGTTATTTTTGATTACCAAATTACTCTTAGTATAGCATTGTGTTCTGCCAATAAGTTCTACTTGTAGCAAGACAGAAAGCTATCAACCCCACCCTGTTCCGTTTCAATGACAGCTAAATCCCGTAACACATTGTGGGTGTGAATGTGCTACCAATGCATCACACATGAATGATTCTCATTTTATGAGGCTCCTCGGACAATGACCATCACCAGGTAGTCCTCTTCGGTTTTGGCAAGGGCTTTAGCTGAGGCATCCATGAACTGCTGGGAAAAATCACAGGGCGGGAAAGCGTGAAGAACTCCTGCGCCGTCCTTGTCGCGGGTGCCACCCACAGGCAGGCTGATGACGCCGGCTGCTTGCTTCTGCTTCAGGTAGGAGACCAGGTTCTTTAGAGGCCTCTCGGTGGAGCTTCCCACATCCTGGGGCCCCTCCTCACAGCTCCCGGGCACAGCCAAGAGGACAGAATAGCCACTGGGGCCTGCAGTCTTGATGCGACGGGACACCTCATCCAGCTTGGGCTGGTCCAGACGCAGGCGCTGGGTGATCTTTAGCTGGGACACCTGACCACCAGTGGAGCTCTCCACCAGTAGTCTGGCTGCCACAGCTAAGTCCCCCTCTAGCAGGTGCATGGAGGTGGGGAAGCTGCTGTTCTTCAGCAGGAGCACGCCATGCCAGGCCTGACATAGCTTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1686451 lncRNA upstream 4948 63479319 ~ 63479519 (+) True G1474628
TU1686449 lncRNA upstream 5564 63478599 ~ 63478903 (+) True G1474626
TU1686411 lncRNA upstream 21797 63462462 ~ 63462670 (+) True G1474613
TU1686402 lncRNA upstream 27356 63456888 ~ 63457111 (+) True G1474604
TU1686399 lncRNA upstream 29118 63455113 ~ 63455349 (+) True G1474601
TU1686475 lncRNA downstream 18924 63506409 ~ 63506836 (+) True G1474645
TU1686478 lncRNA downstream 26662 63514147 ~ 63514416 (+) True G1474648
TU1686481 lncRNA downstream 56021 63543506 ~ 63545595 (+) True G1474650
TU1686558 lncRNA downstream 157526 63645011 ~ 63645409 (+) True G1474725
TU1686647 lncRNA downstream 163549 63651034 ~ 63651292 (+) True G1474803
XM_021569319.2 mRNA upstream 13218 63466101 ~ 63471249 (+) True LOC110494347
XM_021569315.2 mRNA upstream 111913 63356672 ~ 63372554 (+) False LOC110494344
XM_021569314.2 mRNA upstream 111913 63356674 ~ 63372554 (+) True LOC110494344
XM_021569311.2 mRNA upstream 218954 63249564 ~ 63265513 (+) True LOC110494341
XM_021569310.2 mRNA upstream 218956 63249564 ~ 63265511 (+) False LOC110494341
XM_036950422.1 mRNA downstream 29251 63516736 ~ 63543481 (+) True LOC110494349
XR_005037047.1 mRNA downstream 87075 63574560 ~ 63580589 (+) True LOC118940486
XM_021569327.2 mRNA downstream 170888 63658373 ~ 63663255 (+) False srsf3b
XM_021569330.2 mRNA downstream 178363 63665848 ~ 63671434 (+) False cdkn1a
XM_021569331.2 mRNA downstream 179275 63666760 ~ 63671434 (+) False cdkn1a
TU1685904 other upstream 266873 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 773331 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 785652 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1927429 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 2485404 60972478 ~ 60999063 (+) True G1471723
TU1686655 other downstream 170959 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 196605 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1075889 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1120769 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 1267836 64755321 ~ 64774706 (+) False LOC110494389

Expression Profile