RNA id: TU1686874



Basic Information


Item Value
RNA id TU1686874
length 236
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G1475012
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63980619 ~ 63980854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctatcttgtctcatcgctacaactcccatacgggctcggaagagacgaaggttgaaagtcatgcgtcctccgatacacaacccaaccaagccgcactgcttcttaacacagcgccatccaacccggaagccagccacactaacgtgtcggaggaaacaccgtgcaaccTAGGTTAGCAcacactgcacccggcccgccacaggagtcgttggtgcgcgatgagacaaggatttccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1686870 lncRNA upstream 2699 63977668 ~ 63977920 (+) True G1475008
TU1686867 lncRNA upstream 5073 63975346 ~ 63975546 (+) True G1475005
TU1686857 lncRNA upstream 14046 63966360 ~ 63966573 (+) True G1474995
TU1686838 lncRNA upstream 29534 63944119 ~ 63951085 (+) True G1474977
TU1686816 lncRNA upstream 61550 63911845 ~ 63919069 (+) True LOC110494366
TU1686933 lncRNA downstream 108903 64089757 ~ 64091921 (+) True G1475066
TU1686939 lncRNA downstream 114851 64095705 ~ 64096426 (+) True G1475072
TU1686945 lncRNA downstream 126378 64107232 ~ 64107471 (+) True G1475078
TU1686981 lncRNA downstream 198402 64179256 ~ 64180301 (+) True G1475111
TU1687099 lncRNA downstream 392691 64373545 ~ 64379198 (+) True G1475223
XM_036950425.1 mRNA upstream 61063 63909040 ~ 63919556 (+) False LOC110494366
XM_021569356.2 mRNA upstream 61063 63909042 ~ 63919556 (+) False LOC110494366
XM_021569354.2 mRNA upstream 76744 63892998 ~ 63903875 (+) False nbl1
XM_021569353.2 mRNA upstream 76744 63894081 ~ 63903875 (+) True nbl1
XM_021569352.2 mRNA upstream 97092 63878239 ~ 63883527 (+) False LOC110494364
XM_036950426.1 mRNA downstream 62301 64043155 ~ 64052786 (+) True LOC110494367
XM_021569358.2 mRNA downstream 72374 64053228 ~ 64056392 (+) True LOC110494368
LOC110493238 mRNA downstream 76143 64056997 ~ 64058645 (+) True LOC110493238
XM_021569359.2 mRNA downstream 82916 64063770 ~ 64066586 (+) True fndc10
XM_021569360.2 mRNA downstream 85917 64066771 ~ 64071414 (+) True ssu72
TU1686672 other upstream 292529 63684090 ~ 63688090 (+) True tmcc2
TU1686655 other upstream 317365 63658444 ~ 63663254 (+) True srsf3b
TU1685904 other upstream 763025 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 1269483 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 1281804 62698503 ~ 62698815 (+) True G1473171
TU1687795 other downstream 582520 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 627400 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 774467 64755321 ~ 64774706 (+) False LOC110494389
TU1688070 other downstream 774467 64755321 ~ 64780475 (+) False LOC110494389
TU1688642 other downstream 1322563 65303417 ~ 65304128 (+) True G1476510

Expression Profile