RNA id: TU1688292


Basic Information

Item Value
RNA id TU1688292
length 248
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1476227
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 65029390 ~ 65029637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgtggtgcacacaatgataccaaacatcacagtgactactttactctggtccatgttcagtgtggtgcacacaatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggtgcacacaatgataccaaacagctcagtgactactttactctggtccatgttcagtgtggtgaccacaatgataccaaacagcacagtgactactttactctggtccatgttcagtgtggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1688285 lncRNA upstream 19333 65009506 ~ 65010057 (+) True G1476220
TU1688251 lncRNA upstream 86639 64942452 ~ 64942751 (+) True G1476189
TU1688240 lncRNA upstream 104606 64924422 ~ 64924784 (+) True G1476178
TU1688200 lncRNA upstream 110864 64914503 ~ 64918526 (+) True G1476140
TU1688197 lncRNA upstream 130119 64896972 ~ 64899271 (+) True LOC110494394
TU1688424 lncRNA downstream 11629 65041266 ~ 65041535 (+) True G1476330
TU1688427 lncRNA downstream 12490 65042127 ~ 65042336 (+) True G1476333
TU1688428 lncRNA downstream 14203 65043840 ~ 65044233 (+) True G1476334
TU1688431 lncRNA downstream 19225 65048862 ~ 65049094 (+) True G1476337
TU1688440 lncRNA downstream 24624 65054261 ~ 65054483 (+) True G1476346
XM_036950447.1 mRNA upstream 14600 64996583 ~ 65014790 (+) False LOC110494396
XM_036950448.1 mRNA upstream 14600 64996666 ~ 65014790 (+) True LOC110494396
XM_036950449.1 mRNA upstream 17885 64996582 ~ 65011505 (+) False LOC110494396
XM_021569402.2 mRNA upstream 115196 64896863 ~ 64914194 (+) False LOC110494394
LOC118940493 mRNA downstream 423715 65453352 ~ 65454830 (+) True LOC118940493
XR_005037053.1 mRNA downstream 494062 65523699 ~ 65552657 (+) False LOC118940487
XM_021569418.2 mRNA downstream 542730 65572367 ~ 65578944 (+) True LOC110494410
XM_036950455.1 mRNA downstream 550619 65580256 ~ 65649976 (+) False LOC110516128
XM_036950457.1 mRNA downstream 550619 65580256 ~ 65649976 (+) False LOC110516128
TU1688070 other upstream 248915 64755321 ~ 64780475 (+) False LOC110494389
TU1688055 other upstream 254684 64755321 ~ 64774706 (+) False LOC110494389
TU1687820 other upstream 407221 64608254 ~ 64622169 (+) True LOC110494386
TU1687795 other upstream 464244 64563374 ~ 64565146 (+) True G1475820
TU1686672 other upstream 1341300 63684090 ~ 63688090 (+) True tmcc2
TU1688642 other downstream 273780 65303417 ~ 65304128 (+) True G1476510
TU1688655 other downstream 296240 65325877 ~ 65327163 (+) True G1476520
TU1688718 other downstream 388454 65418091 ~ 65448513 (+) False G1476569
TU1688719 other downstream 388454 65418091 ~ 65466767 (+) True G1476569
TU1689118 other downstream 752142 65781779 ~ 65783335 (+) True G1476898

Expression Profile