RNA id: TU1688440


Basic Information

Item Value
RNA id TU1688440
length 223
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1476346
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 65054261 ~ 65054483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatagagacagaaagggagacagatagagacaggatGGGAGACAAATAGAGACAGGatgggagacagatagagactgaaagggagacagagaaagacagaaagggagacagatagagacagaaagggagacagatatacacagaaagggagacaaagacagagaaaggCCGAAagggagacatagagacataaagagaggcagagacataaagggagacagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1688431 lncRNA upstream 5167 65048862 ~ 65049094 (+) True G1476337
TU1688428 lncRNA upstream 10028 65043840 ~ 65044233 (+) True G1476334
TU1688427 lncRNA upstream 11925 65042127 ~ 65042336 (+) True G1476333
TU1688424 lncRNA upstream 12726 65041266 ~ 65041535 (+) True G1476330
TU1688292 lncRNA upstream 24624 65029390 ~ 65029637 (+) True G1476227
TU1688497 lncRNA downstream 53033 65107516 ~ 65110679 (+) False G1476393
TU1688498 lncRNA downstream 54061 65108544 ~ 65110313 (+) False G1476393
TU1688499 lncRNA downstream 54061 65108544 ~ 65110679 (+) True G1476393
TU1688506 lncRNA downstream 60192 65114675 ~ 65115824 (+) True G1476398
TU1688536 lncRNA downstream 93728 65148211 ~ 65149053 (+) True G1476427
XM_036950447.1 mRNA upstream 39471 64996583 ~ 65014790 (+) False LOC110494396
XM_036950448.1 mRNA upstream 39471 64996666 ~ 65014790 (+) True LOC110494396
XM_036950449.1 mRNA upstream 42756 64996582 ~ 65011505 (+) False LOC110494396
XR_005037051.1 mRNA upstream 140067 64896863 ~ 64914194 (+) False LOC110494394
LOC118940493 mRNA downstream 398869 65453352 ~ 65454830 (+) True LOC118940493
XR_005037053.1 mRNA downstream 469216 65523699 ~ 65552657 (+) False LOC118940487
XM_021569418.2 mRNA downstream 517884 65572367 ~ 65578944 (+) True LOC110494410
XM_036950455.1 mRNA downstream 525773 65580256 ~ 65649976 (+) False LOC110516128
XM_036950457.1 mRNA downstream 525773 65580256 ~ 65649976 (+) False LOC110516128
TU1688070 other upstream 273786 64755321 ~ 64780475 (+) False LOC110494389
TU1688055 other upstream 279555 64755321 ~ 64774706 (+) False LOC110494389
TU1687820 other upstream 432092 64608254 ~ 64622169 (+) True LOC110494386
TU1687795 other upstream 489115 64563374 ~ 64565146 (+) True G1475820
TU1686672 other upstream 1366171 63684090 ~ 63688090 (+) True tmcc2
TU1688642 other downstream 248934 65303417 ~ 65304128 (+) True G1476510
TU1688655 other downstream 271394 65325877 ~ 65327163 (+) True G1476520
TU1688718 other downstream 363608 65418091 ~ 65448513 (+) False G1476569
TU1688719 other downstream 363608 65418091 ~ 65466767 (+) True G1476569
TU1689118 other downstream 727296 65781779 ~ 65783335 (+) True G1476898

Expression Profile