RNA id: TU1688690


Basic Information

Item Value
RNA id TU1688690
length 213
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1476551
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 65395711 ~ 65402635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctcagtaagaccaaaataatggtgttccaaaaaaggtccagtcaccaggaccacaaatacaaattgcatctagacactgttgccctagagcacacaaaaaaactatacataccttggcctaaacatcagcgccacaggtaacttccacaaagctgtgaacgatctgagagacaaggcaagaagggcattctatgccatcaaaaggaacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1688670 lncRNA upstream 41203 65354250 ~ 65354508 (+) True G1476531
TU1688597 lncRNA upstream 98051 65251334 ~ 65297660 (+) True G1476477
TU1688596 lncRNA upstream 122195 65248636 ~ 65273516 (+) True G1476476
TU1688536 lncRNA upstream 246658 65148211 ~ 65149053 (+) True G1476427
TU1688506 lncRNA upstream 279887 65114675 ~ 65115824 (+) True G1476398
TU1688708 lncRNA downstream 38380 65441015 ~ 65500519 (+) False G1476568
TU1688714 lncRNA downstream 38380 65441015 ~ 65476017 (+) False G1476568
TU1688717 lncRNA downstream 40651 65443286 ~ 65476017 (+) True G1476568
TU1688573 lncRNA downstream 121062 65523697 ~ 65527761 (+) False LOC118940487
TU1688572 lncRNA downstream 123535 65526170 ~ 65526825 (+) True LOC118940487
XM_036950447.1 mRNA upstream 380921 64996583 ~ 65014790 (+) False LOC110494396
XM_036950448.1 mRNA upstream 380921 64996666 ~ 65014790 (+) True LOC110494396
XM_036950449.1 mRNA upstream 384206 64996582 ~ 65011505 (+) False LOC110494396
XR_005037051.1 mRNA upstream 481517 64896863 ~ 64914194 (+) False LOC110494394
LOC118940493 mRNA downstream 50717 65453352 ~ 65454830 (+) True LOC118940493
XR_005037053.1 mRNA downstream 121064 65523699 ~ 65552657 (+) False LOC118940487
XM_021569418.2 mRNA downstream 169732 65572367 ~ 65578944 (+) True LOC110494410
XM_036950455.1 mRNA downstream 177621 65580256 ~ 65649976 (+) False LOC110516128
XM_036950457.1 mRNA downstream 177621 65580256 ~ 65649976 (+) False LOC110516128
TU1688655 other upstream 68548 65325877 ~ 65327163 (+) True G1476520
TU1688642 other upstream 91583 65303417 ~ 65304128 (+) True G1476510
TU1688070 other upstream 615236 64755321 ~ 64780475 (+) False LOC110494389
TU1688055 other upstream 621005 64755321 ~ 64774706 (+) False LOC110494389
TU1687820 other upstream 773542 64608254 ~ 64622169 (+) True LOC110494386
TU1688718 other downstream 15456 65418091 ~ 65448513 (+) False G1476569
TU1688719 other downstream 15456 65418091 ~ 65466767 (+) True G1476569
TU1689118 other downstream 379144 65781779 ~ 65783335 (+) True G1476898
TU1689604 other downstream 886237 66288872 ~ 66290448 (+) True G1477313
TU1689884 other downstream 1154402 66557037 ~ 66557512 (+) True G1477578

Expression Profile