RNA id: TU1689513


Basic Information

Item Value
RNA id TU1689513
length 309
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1477230
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66145628 ~ 66145936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacatagtggcctccatcactcttaaatggaagaagtttgtatccaccaagactcttcctagagctggccacctggccaaactgagcaattgggggagaagggccttgttcagggaggtgaccaagaacctgatggtcactctgacagagctcctgagttccttgtccttccagaaagacaaccatctctgcagcactccaccaataaggcctttatggtagagtggacagacgaaagccactcctcagtaaaaggcacatggcaggccgcttggagtttgccaaaagtcacctaaggactcttagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1689505 lncRNA upstream 7521 66137866 ~ 66138107 (+) True G1477222
TU1689504 lncRNA upstream 7871 66137548 ~ 66137757 (+) True G1477221
TU1689474 lncRNA upstream 40526 66104764 ~ 66105102 (+) True G1477192
TU1689158 lncRNA upstream 293666 65851286 ~ 65851962 (+) True G1476926
TU1689143 lncRNA upstream 313540 65825543 ~ 65832088 (+) False G1476914
TU1689514 lncRNA downstream 437 66146373 ~ 66146574 (+) True G1477231
TU1689575 lncRNA downstream 58436 66204372 ~ 66204645 (+) True G1477284
TU1689584 lncRNA downstream 65657 66211593 ~ 66211899 (+) True G1477293
TU1689594 lncRNA downstream 82827 66228763 ~ 66229773 (+) True G1477303
TU1689600 lncRNA downstream 100519 66246455 ~ 66266260 (+) True G1477309
XM_036950451.1 mRNA upstream 495652 65610366 ~ 65649976 (+) False LOC110516128
XM_021569426.2 mRNA downstream 245460 66391396 ~ 66401187 (+) False LOC110494417
XM_021569425.2 mRNA downstream 245465 66391401 ~ 66401187 (+) True LOC110494417
XM_036947909.1 mRNA downstream 319519 66465455 ~ 66527607 (+) False pax7a
XM_036947910.1 mRNA downstream 319519 66465455 ~ 66527607 (+) False pax7a
XM_036947911.1 mRNA downstream 319519 66465455 ~ 66527607 (+) False pax7a
TU1689118 other upstream 362293 65781779 ~ 65783335 (+) True G1476898
TU1688719 other upstream 678861 65418091 ~ 65466767 (+) True G1476569
TU1688718 other upstream 697115 65418091 ~ 65448513 (+) False G1476569
TU1688655 other upstream 818465 65325877 ~ 65327163 (+) True G1476520
TU1688642 other upstream 841500 65303417 ~ 65304128 (+) True G1476510
TU1689604 other downstream 142936 66288872 ~ 66290448 (+) True G1477313
TU1689884 other downstream 411101 66557037 ~ 66557512 (+) True G1477578
TU1689890 other downstream 533324 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other downstream 571437 66717373 ~ 66718688 (+) True G1477697
TU1690057 other downstream 687636 66833572 ~ 66834940 (+) False iffo2b

Expression Profile