RNA id: TU1689584


Basic Information

Item Value
RNA id TU1689584
length 307
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1477293
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66211593 ~ 66211899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaaagtctatatacagtgtgtgcaaaaggcatgaggaggtaggcgaataattacaattttgcagattaacactggagtgataaatgatcagatggtcatgtacaggtagagatattggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtgaaaatgggtgggctatttaccaatagactatgtacagctgcagcgatcggttagctgctcagatagctgatgtttgaagttggtgagggagataaaagtctccaacttcagcgatttttgcaattcgttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1689575 lncRNA upstream 6948 66204372 ~ 66204645 (+) True G1477284
TU1689514 lncRNA upstream 65019 66146373 ~ 66146574 (+) True G1477231
TU1689513 lncRNA upstream 65657 66145628 ~ 66145936 (+) True G1477230
TU1689505 lncRNA upstream 73486 66137866 ~ 66138107 (+) True G1477222
TU1689504 lncRNA upstream 73836 66137548 ~ 66137757 (+) True G1477221
TU1689594 lncRNA downstream 16864 66228763 ~ 66229773 (+) True G1477303
TU1689600 lncRNA downstream 34556 66246455 ~ 66266260 (+) True G1477309
TU1689619 lncRNA downstream 114390 66326289 ~ 66326506 (+) True G1477326
TU1689621 lncRNA downstream 122058 66333957 ~ 66334181 (+) True G1477328
TU1689624 lncRNA downstream 126371 66338270 ~ 66338626 (+) True G1477331
XM_036950451.1 mRNA upstream 561617 65610366 ~ 65649976 (+) False LOC110516128
XM_021569426.2 mRNA downstream 179497 66391396 ~ 66401187 (+) False LOC110494417
XM_021569425.2 mRNA downstream 179502 66391401 ~ 66401187 (+) True LOC110494417
XM_036947909.1 mRNA downstream 253556 66465455 ~ 66527607 (+) False pax7a
XM_036947910.1 mRNA downstream 253556 66465455 ~ 66527607 (+) False pax7a
XM_036947911.1 mRNA downstream 253556 66465455 ~ 66527607 (+) False pax7a
TU1689118 other upstream 428258 65781779 ~ 65783335 (+) True G1476898
TU1688719 other upstream 744826 65418091 ~ 65466767 (+) True G1476569
TU1688718 other upstream 763080 65418091 ~ 65448513 (+) False G1476569
TU1688655 other upstream 884430 65325877 ~ 65327163 (+) True G1476520
TU1688642 other upstream 907465 65303417 ~ 65304128 (+) True G1476510
TU1689604 other downstream 76973 66288872 ~ 66290448 (+) True G1477313
TU1689884 other downstream 345138 66557037 ~ 66557512 (+) True G1477578
TU1689890 other downstream 467361 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other downstream 505474 66717373 ~ 66718688 (+) True G1477697
TU1690057 other downstream 621673 66833572 ~ 66834940 (+) False iffo2b

Expression Profile