RNA id: TU1689624


Basic Information

Item Value
RNA id TU1689624
length 357
lncRNA type antisense_over
GC content 0.63
exon number 1
gene id G1477331
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66338270 ~ 66338626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAGATGGTGGACAAGGTGACCGTGTGGAAGATGGAGCTGAGGGGAAGCTGCAGACGACACACCATGTCTCCTGGCCGGACCAGGAACAGCAGCAGGCAGGCACAGCCTCCCATCATGCTGAGTAGGGACACACCACCCAGGGGCCCCCCAGAGGCCCTCACCAGCGGAGAACCCCGGTGCTGCAGGAACAGGACCCCCACAGCCCCCTGACAGGCCATCAGCACCAGCATGGCCAGCAGCAGCCCCAAGGACTCAGGCTGGCCCCAGGTTAGGAAGTCAAAGGTAGGCTCGGTGCAGTTGGTGCTACGTACCAGGGACCACTGGCCCTCTAGACACTGGGTACACTGGATGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1689621 lncRNA upstream 4089 66333957 ~ 66334181 (+) True G1477328
TU1689619 lncRNA upstream 11764 66326289 ~ 66326506 (+) True G1477326
TU1689600 lncRNA upstream 72010 66246455 ~ 66266260 (+) True G1477309
TU1689594 lncRNA upstream 108497 66228763 ~ 66229773 (+) True G1477303
TU1689584 lncRNA upstream 126371 66211593 ~ 66211899 (+) True G1477293
TU1689625 lncRNA downstream 577 66339203 ~ 66339468 (+) True G1477332
TU1689626 lncRNA downstream 891 66339517 ~ 66339919 (+) True G1477333
TU1689653 lncRNA downstream 42027 66380653 ~ 66380931 (+) True G1477359
TU1689655 lncRNA downstream 43731 66382357 ~ 66382585 (+) True G1477361
TU1689663 lncRNA downstream 68657 66407283 ~ 66407572 (+) True G1477369
XM_036950451.1 mRNA upstream 688294 65610366 ~ 65649976 (+) False LOC110516128
XM_021569426.2 mRNA downstream 52770 66391396 ~ 66401187 (+) False LOC110494417
XM_021569425.2 mRNA downstream 52775 66391401 ~ 66401187 (+) True LOC110494417
XM_036947909.1 mRNA downstream 126829 66465455 ~ 66527607 (+) False pax7a
XM_036947910.1 mRNA downstream 126829 66465455 ~ 66527607 (+) False pax7a
XM_036947911.1 mRNA downstream 126829 66465455 ~ 66527607 (+) False pax7a
TU1689604 other upstream 47822 66288872 ~ 66290448 (+) True G1477313
TU1689118 other upstream 554935 65781779 ~ 65783335 (+) True G1476898
TU1688719 other upstream 871503 65418091 ~ 65466767 (+) True G1476569
TU1688718 other upstream 889757 65418091 ~ 65448513 (+) False G1476569
TU1688655 other upstream 1011107 65325877 ~ 65327163 (+) True G1476520
TU1689884 other downstream 218411 66557037 ~ 66557512 (+) True G1477578
TU1689890 other downstream 340634 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other downstream 378747 66717373 ~ 66718688 (+) True G1477697
TU1690057 other downstream 494946 66833572 ~ 66834940 (+) False iffo2b
TU1690094 other downstream 528899 66867525 ~ 66867880 (+) True LOC110494429

Expression Profile