RNA id: TU1689663


Basic Information

Item Value
RNA id TU1689663
length 290
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G1477369
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66407283 ~ 66407572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATACATGTTTTTAATTGCCACACATTACTTACTCCTTATTTCCATTGGTTGGAAGGTAATGTTGGTAACCTGGATTCGCACATTTTCAAATGCTTGACTGATGATCATCAGGTTATCTGTGTTGTTCAAGATATTCCTAAGTATGGGTTCCAGTTCATTGTTGAGGAAATCAATTTGGGATGCATTGTTGGGATAGGAGTATTCCGCTATGCTCTCTGCAACTATACTTCCAGGTCTAGAAGAATAGACATAAATCACATTTCAAGAGTTCAACAGTTGATTAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1689655 lncRNA upstream 24698 66382357 ~ 66382585 (+) True G1477361
TU1689653 lncRNA upstream 26352 66380653 ~ 66380931 (+) True G1477359
TU1689626 lncRNA upstream 67364 66339517 ~ 66339919 (+) True G1477333
TU1689625 lncRNA upstream 67815 66339203 ~ 66339468 (+) True G1477332
TU1689624 lncRNA upstream 68657 66338270 ~ 66338626 (+) True G1477331
TU1689664 lncRNA downstream 1636 66409208 ~ 66410103 (+) True G1477370
TU1689667 lncRNA downstream 4220 66411792 ~ 66418996 (+) True G1477371
TU1689675 lncRNA downstream 16713 66424285 ~ 66424652 (+) True G1477379
TU1689674 lncRNA downstream 19088 66426660 ~ 66427037 (+) True G1477378
TU1689677 lncRNA downstream 19648 66427220 ~ 66427556 (+) True G1477381
XM_021569426.2 mRNA upstream 6096 66391396 ~ 66401187 (+) False LOC110494417
XM_021569425.2 mRNA upstream 6096 66391401 ~ 66401187 (+) True LOC110494417
XM_036950451.1 mRNA upstream 757307 65610366 ~ 65649976 (+) False LOC110516128
XM_036947909.1 mRNA downstream 57883 66465455 ~ 66527607 (+) False pax7a
XM_036947910.1 mRNA downstream 57883 66465455 ~ 66527607 (+) False pax7a
XM_036947911.1 mRNA downstream 57883 66465455 ~ 66527607 (+) False pax7a
XM_036947912.1 mRNA downstream 57883 66465455 ~ 66527607 (+) False pax7a
XM_036947913.1 mRNA downstream 57883 66465455 ~ 66527607 (+) False pax7a
TU1689604 other upstream 116835 66288872 ~ 66290448 (+) True G1477313
TU1689118 other upstream 623948 65781779 ~ 65783335 (+) True G1476898
TU1688719 other upstream 940516 65418091 ~ 65466767 (+) True G1476569
TU1688718 other upstream 958770 65418091 ~ 65448513 (+) False G1476569
TU1688655 other upstream 1080120 65325877 ~ 65327163 (+) True G1476520
TU1689884 other downstream 149465 66557037 ~ 66557512 (+) True G1477578
TU1689890 other downstream 271688 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other downstream 309801 66717373 ~ 66718688 (+) True G1477697
TU1690057 other downstream 426000 66833572 ~ 66834940 (+) False iffo2b
TU1690094 other downstream 459953 66867525 ~ 66867880 (+) True LOC110494429

Expression Profile