RNA id: TU1689674


Basic Information

Item Value
RNA id TU1689674
length 378
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1477378
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66426660 ~ 66427037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGTACTATCCATTGAAGGATGGCTTGTGGAACCATGTTCTTTAGTAGACATCTCAATTGAAGACATCTCCGAAGTGGATTGTGACATTCCTGAAGTTGACAATTTGTTGGTGGTTGGACTGGTGTCTTCAGTTGTTTGAGACTCCATTGAGGTAGGGATTGATGTGCTTTGGGTTTGATTTACAGTTACATCTTGTCCTGTAATAACAGGGTAGGATGTTATATGTGTAGTGGAGGGTGACTTCAATGATTCAGTTGTCTTGGGGGAGTTTGTAGTCTTGAATTGTGTAGAAATATGATCTTCTGCAGTTGAGACCACAGCTGTACTATCCATTGAAGGATGGCTTGTGGAACCATGTTCTTTAGTAGACATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1689675 lncRNA upstream 2008 66424285 ~ 66424652 (+) True G1477379
TU1689667 lncRNA upstream 7664 66411792 ~ 66418996 (+) True G1477371
TU1689664 lncRNA upstream 16557 66409208 ~ 66410103 (+) True G1477370
TU1689663 lncRNA upstream 19088 66407283 ~ 66407572 (+) True G1477369
TU1689655 lncRNA upstream 44075 66382357 ~ 66382585 (+) True G1477361
TU1689677 lncRNA downstream 183 66427220 ~ 66427556 (+) True G1477381
TU1689673 lncRNA downstream 3883 66430920 ~ 66438462 (+) True G1477377
TU1689814 lncRNA downstream 94085 66521122 ~ 66522431 (+) True G1477510
TU1689876 lncRNA downstream 124476 66551513 ~ 66551726 (+) True G1477570
TU1689882 lncRNA downstream 129223 66556260 ~ 66556536 (+) True G1477576
XM_021569426.2 mRNA upstream 25473 66391396 ~ 66401187 (+) False LOC110494417
XM_021569425.2 mRNA upstream 25473 66391401 ~ 66401187 (+) True LOC110494417
XM_036950454.1 mRNA upstream 776684 65610369 ~ 65649976 (+) False LOC110516128
XM_036947909.1 mRNA downstream 38418 66465455 ~ 66527607 (+) False pax7a
XM_036947910.1 mRNA downstream 38418 66465455 ~ 66527607 (+) False pax7a
XM_036947911.1 mRNA downstream 38418 66465455 ~ 66527607 (+) False pax7a
XM_036947912.1 mRNA downstream 38418 66465455 ~ 66527607 (+) False pax7a
XM_036947913.1 mRNA downstream 38418 66465455 ~ 66527607 (+) False pax7a
TU1689604 other upstream 136212 66288872 ~ 66290448 (+) True G1477313
TU1689118 other upstream 643325 65781779 ~ 65783335 (+) True G1476898
TU1688719 other upstream 959893 65418091 ~ 65466767 (+) True G1476569
TU1688718 other upstream 978147 65418091 ~ 65448513 (+) False G1476569
TU1688655 other upstream 1099497 65325877 ~ 65327163 (+) True G1476520
TU1689884 other downstream 130000 66557037 ~ 66557512 (+) True G1477578
TU1689890 other downstream 252223 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other downstream 290336 66717373 ~ 66718688 (+) True G1477697
TU1690057 other downstream 406535 66833572 ~ 66834940 (+) False iffo2b
TU1690094 other downstream 440488 66867525 ~ 66867880 (+) True LOC110494429

Expression Profile