RNA id: TU1690447


Basic Information

Item Value
RNA id TU1690447
length 1212
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1478094
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 67089307 ~ 67090518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtgcttttctttcaaaaacaaggacatttctaagtgaagtgagcccaaacttttgaacggtagtgtacctatttgtattatttttaatgACACGGCTATAGCCCTCATGTGGAGGTCTTGAGAAAGGAATTGTAAATGGACTGTCCTGAACTGAAGAGATTACTGTATACAGTACTGTGTGATTGTAGCTCTGCTCTATAGGCTTTTTATATGAATGTTCTGAGGTGCTCTGTTGGCTGAAAAGTGTTACTGCACAGTGTCTGCCCGTGTCTGACTGTCTTCTCAGACAAAGCACTTTACCTGAAGTTTAACTGAGTGCAGTATCACACGGCCTTGACTGACCTCATTCAATTACAAACACAACAATAGATATTGGCCAGTTGAAATAGGGATAACAAATAGGGCACATGTCAGTTCTTAGGCTACTATTTTGCCCCCAATTTAGTGCGTGTTTATCAGTGCTGTTCTGTCCATGGAGTGTACAGTCCCAGTGTTTCTGTTCATCCTGTTACTCCATTTGTAAGTCATGTGAGGGTCACTGTGTGGACTAGCTATAGTGTAGTTTTGGACAAGACCCACACACCTTGTCATTGATTGAAATAGGGTTACTGGATAGCAGCATATAACAACGCTATGTAAATACTAAGATTTACAATGCTTTGTCTCTCTCATACTCTTATCGATCATGTACCTAACTACACAGTATGCATGAGAGAAACTGAATGTTGCAGGGTAGTTGCCATAGAACTGCAATGTGCGCACAGGATGTGTTCAATCAAATCCACATGTCTGTTTCCTTACGGAGTGCTGAAGTGACTATGAAATGCAATCAAACTGAAGTCAGTATGAATGTAATGTGTTTGTAAGAAGGCCTCAGTCTAATACTATAAATATATTTACAGTGTATGTACATGCTTATAAACAAGGCTTCAAAAGCTACCAAATGACCCTGGTAAAGGCACCTTTGTTGCAGTGAATGTACAGCATGTGAAATCTTTTGTATGAAGGTTCACTTTGGTAAAGTTCGTAAAGTTCAGAGATGGTTGCTCTGTGTAGCTAGCTTTGAGAGAGACATTGAATTCAAGCAGTGTTATAATGGTACAGATGTTTGTGCTAAATTGCAAATGAATGAAAAAAGTGAATTGTCATCTTTTACTTTGTACTCTGTGTATTTGTtcaatgtgttttaataaatcccCTCAACAACAAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1690448 lncRNA upstream 1835 67087293 ~ 67087472 (+) True G1478095
TU1690377 lncRNA upstream 70900 66919719 ~ 67018407 (+) True G1478035
TU1690433 lncRNA upstream 75354 67012546 ~ 67013953 (+) True G1478081
TU1690407 lncRNA upstream 122075 66961151 ~ 66967232 (+) True agtrap
TU1690373 lncRNA upstream 175073 66913913 ~ 66914234 (+) True G1478031
TU1690457 lncRNA downstream 106440 67196958 ~ 67248760 (+) True arhgef10la
TU1690696 lncRNA downstream 326195 67416713 ~ 67422808 (+) True G1478323
TU1690783 lncRNA downstream 443601 67534119 ~ 67534397 (+) True G1478405
TU1690936 lncRNA downstream 657942 67748460 ~ 67748694 (+) True klhdc7a
TU1690734 lncRNA downstream 662838 67753356 ~ 67754494 (+) True G1478356
XM_021569471.2 mRNA upstream 2909 67038010 ~ 67086398 (+) False LOC110494438
XM_021569476.2 mRNA downstream 997 67091515 ~ 67199623 (+) False arhgef10la
XM_036950490.1 mRNA downstream 997 67091515 ~ 67199623 (+) False arhgef10la
XM_036950492.1 mRNA downstream 997 67091515 ~ 67199623 (+) False arhgef10la
XM_036950493.1 mRNA downstream 997 67091515 ~ 67199623 (+) False arhgef10la
XM_036950491.1 mRNA downstream 8501 67099019 ~ 67199623 (+) False arhgef10la
TU1690094 other upstream 221427 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 254367 66833572 ~ 66834940 (+) False iffo2b
TU1689890 other upstream 308515 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other upstream 370619 66717373 ~ 66718688 (+) True G1477697
TU1689884 other upstream 531795 66557037 ~ 66557512 (+) True G1477578
TU1690884 other downstream 571469 67661987 ~ 67663649 (+) True G1478504
TU1692079 other downstream 1032020 68122538 ~ 68125780 (+) True G1479621
TU1692851 other downstream 1843808 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 1904114 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 3560425 70650943 ~ 70656057 (+) True nampt2

Expression Profile